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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042208 ID=TCONS_00042208|Name=TCONS_00042208|organism=Clytia hemisphaerica|type=transcript|length=575bp
TTTTAGTTATTTGGAAAAACACTGAAGTttagcccagtgcgttgcgcatg
CTTGACATATCTCAAGATATTCGAAGCACAGTATATAAGGGTCGACAAGA
GAGAGAGTTAGTCATTCACAGTCAACATGCCCATATTTTCCAGGACGAAA
GAATTGGAAGAGAAATACTTCACGGAAGCCAGCGAATTACGTTCCAAACT
GGAAATGGccgaagaagaaaagaaacgTTTTCAAAAGCAAATCGAGCAAT
ATGAAGATGAGAAAACAAAGCAAGCTGGACATCAAAACCACGATCAAAAG
ATTGAATATCTCATGAGTCTGAAGAAGAACTTGAACACGCTAAGAGAGga
gaacaTCGTGTTACGGAAGAAGCAAGTCAAATGCTTATGTAACTGACCTG
ACCTTTCCATCTAACGATTTTTCCGTTCTCTGTAGAATGTATATACAATT
TTTGCGGTatatttttattagaaatttcTTAGCAATTAGTAACTTTGGAA
ATAGATATTTATTAAGAAATCAACCTACATGGAAATGCGTGTCATTTTTT
TACGTCTTCTCCTCTAATCACTTCA Run BLAST on NCBI transcript from alignment at sc0003281:9615..11964+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042208 ID=TCONS_00042208|Name=TCONS_00042208|organism=Clytia hemisphaerica|type=transcript|length=2350bp|location=Sequence derived from alignment at sc0003281:9615..11964+ (Clytia hemisphaerica)
TTTTAGTTATTTGGAAAAACACTGAAGTttagcccagtgcgttgcgcatg
CTTGACATATCTCAAGATATTCGAAGCACAGTATATAAGGGTCGACAAGA
GAGAGAGTTAGTCATTCACAGTCAACATGCCCATATTTTCCAGGACGAAA
GAATTGGAAGAGAAATACTTCACGGAAGCCAGCGAATTACGTTCCAAACT
GGAAATGGccgaagaagaaaagaaacgTTTTCAAAAGGTGTGTATATTGC
CGAACGAAACTTTTCTCTGGGTTTTATAATcaacatcaaaaataaaactt
tgctCTTGCTCTTTGTATTTCCCTTTTATTTTGACGGGTATACACAATTG
TTCTCTGGCATGGTAAGGGGCTTGGAATgggattttcaatgaaaaagtgT
TGATGGTTTTTAACCCTCCTGCAAATCTACCCTAAAATTAGAGGGTTCGT
TTCCTGGAAGAGTCCAATAGAGTTTTCAACAAAGTGATTTTATGAAAACT
CTGAATATTTCAGCAAATCGAGCAATATGAAGATGAGAAAACAAAGCAAG
CTGGACATCAAAACCACGATCAAAAGATTGAATATCTCATGAGTCTGAAG
AAGAACTTGAACACGCTAAGAGAGGTAGGTTCGTCGCTTACTCTTACCAT
CATGCGTGAcgttttgcaattttgtcagATTTTTAGGAGTAGCCACAATA
GGAATGTCTGGATAAATATTACATATTCATGTATCACCGACCTTTGATAT
CTTTTTAGGGCCTGCGTAAATAGGGCCGATGAGATACTTAAATGGGATAA
TTTTCGCGTGGATGAAATTTCGTGTTTGAGTTAATCTCGTGGGTGGCACT
ATagggagacaatattttcatgattttgtgcATTTTTACGCCAAATTATG
AATGCTGGTTGTCGAAATACGCATTACTTACTTTTCTTTGATGTCGGTAC
ACTTTTTAAAAGTAGCTATTTGACATTTTTCGAGtctttctcaaaaatat
ttcgcggagaaggcctttccaaatttccctttggacttaaagggacataa
cagtacttgcgaaatttgtaaacaaactgtatgcagcggatacaaaatca
aaacaaatgtcacatgtcaaaataaaaaatcaagcNNCGCGGATGACATC
TAAATCCACTAAATCCAAGAAATtcaatccccgcgaaaatttatcacATT
AAAGTGTTCCATTTTTAGATGAATAGTCCTTCTGTCTAACTAAAAGTTCC
ATGAAGAGCCTTttatattcaatctttttcacccttgtctgtacacaaac
ccgatatctacggctaatttcaaaattcattgccgtagagtactacgcta
cgataatcgtgagatacactctggtacagagtaatttcacccagaggaat
gtaaagagatggaaaaacagcttttctgattactcaaagttcaacgatca
cttctattgaaaattctattgtaaaaacgttgattagatcattaaatgaa
agtccagaaaagacggctcgccatacaaatcggacggtttctacataatt
tgacgataaaaatgaaattttttttttccttttttgccgattgctagttc
aatttttaaggataaggagcaatatttttaccaatgtatagcaaaagaaa
ttcttaacgcaatgatattaaattgattcttgtaaaactgtcagaagtcg
agtaaaatcaagatgaagctATAATTTTCtggagctctagctttccatat
tatgatgcggtcatgatgcggttatatcagtagaatcgctaggaaattct
gagcaagaagatataggtaccttttcgtataggagaggtgtacccaaaat
ataagccaaTATATATAAGCCAAGCGCATAAttaggcttgaaacaaaaga
attttgtcacaacacgcttattatgcagattttttatagcgacaacaaaa
gaaacctatttactcgtcataaactcccttaagggcaagatacctggtat
atgacgagccgtttttccattgttttcaagaagatgtttttccatctctt
tacattcctctgtttCACCCAAGCTTTCACCGCTTCTTCTCGATACTAAT
TTTGTCACtctttttttttccaggagaacaTCGTGTTACGGAAGAAGCAA
GTCAAATGCTTATGTAACTGACCTGACCTTTCCATCTAACGATTTTTCCG
TTCTCTGTAGAATGTATATACAATTTTTGCGGTatatttttattagaaat
ttcTTAGCAATTAGTAACTTTGGAAATAGATATTTATTAAGAAATCAACC
TACATGGAAATGCGTGTCATTTTTTTACGTCTTCTCCTCTAATCACTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042208-exon-sc0003281-1491911889:9615..9851 | TCONS_00042208-exon-sc0003281-1491911889:9615..9851 | Clytia hemisphaerica | exon |
| TCONS_00042208-exon-sc0003281-1510915933:9615..9851 | TCONS_00042208-exon-sc0003281-1510915933:9615..9851 | Clytia hemisphaerica | exon |
| TCONS_00042208-exon-sc0003281-1575043694:9615..9851 | TCONS_00042208-exon-sc0003281-1575043694:9615..9851 | Clytia hemisphaerica | exon |
| TCONS_00042208-exon-sc0003281-1491911889:10128..10238 | TCONS_00042208-exon-sc0003281-1491911889:10128..10238 | Clytia hemisphaerica | exon |
| TCONS_00042208-exon-sc0003281-1510915933:10128..10238 | TCONS_00042208-exon-sc0003281-1510915933:10128..10238 | Clytia hemisphaerica | exon |
| TCONS_00042208-exon-sc0003281-1575043694:10128..10238 | TCONS_00042208-exon-sc0003281-1575043694:10128..10238 | Clytia hemisphaerica | exon |
| TCONS_00042208-exon-sc0003281-1491911889:11738..11964 | TCONS_00042208-exon-sc0003281-1491911889:11738..11964 | Clytia hemisphaerica | exon |
| TCONS_00042208-exon-sc0003281-1510915933:11738..11964 | TCONS_00042208-exon-sc0003281-1510915933:11738..11964 | Clytia hemisphaerica | exon |
| TCONS_00042208-exon-sc0003281-1575043694:11738..11964 | TCONS_00042208-exon-sc0003281-1575043694:11738..11964 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003281 | supercontig | sc0003281:9615..11964 + |
Blast
The following BLAST results are available for this feature:
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