TCONS_00042206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042206
Unique NameTCONS_00042206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042206 ID=TCONS_00042206|Name=TCONS_00042206|organism=Clytia hemisphaerica|type=transcript|length=698bp
GTTGAACGTTGAATCCAAATTTACCTTTTGGAAACAAATGAGGATGGGCA
AGcatttcacaattttcatcATTCAAAATAGTAATTGGTTTTTTCCCTTG
ACCAGGTGCTAGTgttaaaatttcattatctaTTTCTGTTTCAGTGGGAG
TATGGGACATAAGAGTTGTTTCATTTGCACATGAGCGAAACACGTCAAGT
GGGTTTGCTGTTGTCTCAAGTTCTAAAACTGAAGTGTCATTTTGTGTTCT
GCTACCCTCATCAGAAATTTCTTCGTTATCATTGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTGTCTCAAGTTCTAAA
ACTGAAGTGTCATTTTGTGTTCTGCTACCCTCATCAGAAATTTCTTCGTT
ATCATTGCTGGCTGTATTAATGTTAGTAACATATGTATTACTTTCCACCA
TAGTTTCATCATCAGAAATGTTACTGACATCAATCACTATGTCTTGATAA
AGAGGATTGttatcttttaaataatttaacaTTTGCTGAACAAATTCAGG
CCTAATTGCCTCAAAAATTACATGTCCCTTATattctaattttcttttaa
gtttAACTTTGACAAGACCATTATCACTAGTTTTTCTTGGCAGGGTATTA
GCAATATCTTCTATGTCAATTGGAACATTACAAATTGACCCTTTTAAC
Run BLAST on NCBI

protein sequence of TCONS_00042206-protein

>TCONS_00042206-protein ID=TCONS_00042206-protein|Name=TCONS_00042206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
LKGSICNVPIDIEDIANTLPRKTSDNGLVKVKLKRKLEYKGHVIFEAIRP
EFVQQMLNYLKDNNPLYQDIVIDVSNISDDETMVESNTYVTNINTASNDN
EEISDEGSRTQNDTSVLELETTXXXXXXXXXXXXXXXXNDNEEISDEGSR
TQNDTSVLELETTANPLDVFRSCANETTLMSHTPTETEIDNEILTLAPGQ
GKKPITILNDENCEMLAHPHLFPKGKFGFNVQ
Run BLAST on NCBI

transcript from alignment at sc0003278:12837..13534

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042206 ID=TCONS_00042206|Name=TCONS_00042206|organism=Clytia hemisphaerica|type=transcript|length=698bp|location=Sequence derived from alignment at sc0003278:12837..13534 (Clytia hemisphaerica)
GTTAAAAGGGTCAATTTGTAATGTTCCAATTGACATAGAAGATATTGCTA
ATACCCTGCCAAGAAAAACTAGTGATAATGGTCTTGTCAAAGTTaaactt
aaaagaaaattagaatATAAGGGACATGTAATTTTTGAGGCAATTAGGCC
TGAATTTGTTCAGCAAAtgttaaattatttaaaagataaCAATCCTCTTT
ATCAAGACATAGTGATTGATGTCAGTAACATTTCTGATGATGAAACTATG
GTGGAAAGTAATACATATGTTACTAACATTAATACAGCCAGCAATGATAA
CGAAGAAATTTCTGATGAGGGTAGCAGAACACAAAATGACACTTCAGTTT
TAGAACTTGAGACAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCAATGATAACGAAGAAATTTCTGATGAGGGTAGCAG
AACACAAAATGACACTTCAGTTTTAGAACTTGAGACAACAGCAAACCCAC
TTGACGTGTTTCGCTCATGTGCAAATGAAACAACTCTTATGTCCCATACT
CCCACTGAAACAGAAAtagataatgaaattttaacACTAGCACCTGGTCA
AGGGAAAAAACCAATTACTATTTTGAATgatgaaaattgtgaaatgCTTG
CCCATCCTCATTTGTTTCCAAAAGGTAAATTTGGATTCAACGTTCAAC

Coding sequence (CDS) from alignment at sc0003278:12837..13534

>TCONS_00042206 ID=TCONS_00042206|Name=TCONS_00042206|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0003278:12837..13534 (Clytia hemisphaerica)
TTAAAAGGGTCAATTTGTAATGTTCCAATTGACATAGAAGATATTGCTAA
TACCCTGCCAAGAAAAACTAGTGATAATGGTCTTGTCAAAGTTaaactta
aaagaaaattagaatATAAGGGACATGTAATTTTTGAGGCAATTAGGCCT
GAATTTGTTCAGCAAAtgttaaattatttaaaagataaCAATCCTCTTTA
TCAAGACATAGTGATTGATGTCAGTAACATTTCTGATGATGAAACTATGG
TGGAAAGTAATACATATGTTACTAACATTAATACAGCCAGCAATGATAAC
GAAGAAATTTCTGATGAGGGTAGCAGAACACAAAATGACACTTCAGTTTT
AGAACTTGAGACAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCAATGATAACGAAGAAATTTCTGATGAGGGTAGCAGA
ACACAAAATGACACTTCAGTTTTAGAACTTGAGACAACAGCAAACCCACT
TGACGTGTTTCGCTCATGTGCAAATGAAACAACTCTTATGTCCCATACTC
CCACTGAAACAGAAAtagataatgaaattttaacACTAGCACCTGGTCAA
GGGAAAAAACCAATTACTATTTTGAATgatgaaaattgtgaaatgCTTGC
CCATCCTCATTTGTTTCCAAAAGGTAAATTTGGATTCAACGTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026068XLOC_026068Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042206-proteinTCONS_00042206-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042206-exon-sc0003278-1491911889:12837..13534TCONS_00042206-exon-sc0003278-1491911889:12837..13534Clytia hemisphaericaexon
TCONS_00042206-exon-sc0003278-1510915933:12837..13534TCONS_00042206-exon-sc0003278-1510915933:12837..13534Clytia hemisphaericaexon
TCONS_00042206-exon-sc0003278-1575043694:12837..13534TCONS_00042206-exon-sc0003278-1575043694:12837..13534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003278supercontigsc0003278:12837..13534 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.48871	2.37802	2.56083	1.82439	1.40957	0.513806	0.932766	1.58506	1.08317	1.48478	0.658861	1.68481	1.12398	1.17926	0.506771	0.900334	0.891224	0.714107	1.05941	1.217	1.76417	2.08437	0.532904	0.599845	0.350815	0.920541	2.3269	1.18389	1.49618	0.719327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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