TCONS_00042205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042205
Unique NameTCONS_00042205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042205 ID=TCONS_00042205|Name=TCONS_00042205|organism=Clytia hemisphaerica|type=transcript|length=524bp
CACCACTGACAAAGAGCCTTGCACTTGACGAGTATGTGTTGCTGATGAAG
GTAGCAATCTCAGGACAAACAATTTGAATGTTGTGAATCATGACTCGTCG
ATTTATTCGATTGAAAGCGTTGTCAGCATCAACCAACAAGATTCCATCGC
AATTTTCTTCTTCGAATAAGGTTCGCATAGCATGGACTGCCGCCTCACAA
CCGGACTTCTGGCCACCACATAGCTGAAGATCTCCAACACATTTCAAGAT
GTTTGGTTTTAAAGCTGCCACAACCGACTTTCCAACCAACCGTCTCAACA
CTTCTCCAATCGCAATGGGTCTCACACCTGGGTTTTTATCCAAAGGAATC
AGTCGACTTGATAGCAATGGGTTCAGGGAGCCATCCTGCCAAAGTTGGGG
CTTGTAACATAACTTGCGTGACAGTTTGGCGATGGCGTCACACAGATTCA
TACTGTGAGCTCCGAAAGAGGCTGATGTTAAAATCCTTCTCCAACCATCC
GCATCAAGAGTTGATGGACCCGCA
Run BLAST on NCBI

protein sequence of TCONS_00042205-protein

>TCONS_00042205-protein ID=TCONS_00042205-protein|Name=TCONS_00042205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
AGPSTLDADGWRRILTSASFGAHSMNLCDAIAKLSRKLCYKPQLWQDGSL
NPLLSSRLIPLDKNPGVRPIAIGEVLRRLVGKSVVAALKPNILKCVGDLQ
LCGGQKSGCEAAVHAMRTLFEEENCDGILLVDADNAFNRINRRVMIHNIQ
IVCPEIATFISNTYSSSARLFVSG
Run BLAST on NCBI

transcript from alignment at sc0003277:11828..12351

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042205 ID=TCONS_00042205|Name=TCONS_00042205|organism=Clytia hemisphaerica|type=transcript|length=524bp|location=Sequence derived from alignment at sc0003277:11828..12351 (Clytia hemisphaerica)
TGCGGGTCCATCAACTCTTGATGCGGATGGTTGGAGAAGGATTTTAACAT
CAGCCTCTTTCGGAGCTCACAGTATGAATCTGTGTGACGCCATCGCCAAA
CTGTCACGCAAGTTATGTTACAAGCCCCAACTTTGGCAGGATGGCTCCCT
GAACCCATTGCTATCAAGTCGACTGATTCCTTTGGATAAAAACCCAGGTG
TGAGACCCATTGCGATTGGAGAAGTGTTGAGACGGTTGGTTGGAAAGTCG
GTTGTGGCAGCTTTAAAACCAAACATCTTGAAATGTGTTGGAGATCTTCA
GCTATGTGGTGGCCAGAAGTCCGGTTGTGAGGCGGCAGTCCATGCTATGC
GAACCTTATTCGAAGAAGAAAATTGCGATGGAATCTTGTTGGTTGATGCT
GACAACGCTTTCAATCGAATAAATCGACGAGTCATGATTCACAACATTCA
AATTGTTTGTCCTGAGATTGCTACCTTCATCAGCAACACATACTCGTCAA
GTGCAAGGCTCTTTGTCAGTGGTG

Coding sequence (CDS) from alignment at sc0003277:11828..12351

>TCONS_00042205 ID=TCONS_00042205|Name=TCONS_00042205|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0003277:11828..12351 (Clytia hemisphaerica)
GCGGGTCCATCAACTCTTGATGCGGATGGTTGGAGAAGGATTTTAACATC
AGCCTCTTTCGGAGCTCACAGTATGAATCTGTGTGACGCCATCGCCAAAC
TGTCACGCAAGTTATGTTACAAGCCCCAACTTTGGCAGGATGGCTCCCTG
AACCCATTGCTATCAAGTCGACTGATTCCTTTGGATAAAAACCCAGGTGT
GAGACCCATTGCGATTGGAGAAGTGTTGAGACGGTTGGTTGGAAAGTCGG
TTGTGGCAGCTTTAAAACCAAACATCTTGAAATGTGTTGGAGATCTTCAG
CTATGTGGTGGCCAGAAGTCCGGTTGTGAGGCGGCAGTCCATGCTATGCG
AACCTTATTCGAAGAAGAAAATTGCGATGGAATCTTGTTGGTTGATGCTG
ACAACGCTTTCAATCGAATAAATCGACGAGTCATGATTCACAACATTCAA
ATTGTTTGTCCTGAGATTGCTACCTTCATCAGCAACACATACTCGTCAAG
TGCAAGGCTCTTTGTCAGTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026067XLOC_026067Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042205-proteinTCONS_00042205-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042205-exon-sc0003277-1491911889:11828..12351TCONS_00042205-exon-sc0003277-1491911889:11828..12351Clytia hemisphaericaexon
TCONS_00042205-exon-sc0003277-1510915933:11828..12351TCONS_00042205-exon-sc0003277-1510915933:11828..12351Clytia hemisphaericaexon
TCONS_00042205-exon-sc0003277-1575043694:11828..12351TCONS_00042205-exon-sc0003277-1575043694:11828..12351Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003277supercontigsc0003277:11828..12351 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.21508	1.20021	1.44801	0.841075	0.966195	0.86798	2.16803	1.42048	1.29809	1.26336	0	0.0686322	0	0	0	0	0	0	0	0	0.620717	1.53237	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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