TCONS_00042204 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042204
Unique NameTCONS_00042204
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042204 ID=TCONS_00042204|Name=TCONS_00042204|organism=Clytia hemisphaerica|type=transcript|length=242bp
TGTTCTTCATATAAAGAATGAAAGTTCTTCTAAACAATCAAACTCAATTA
TTAACAGTTAGAGGTAGAGGTAATAAACCATGGCTGAAGAACAAGAAAGG
CAAGCTGCTGAAGTAGCCATCCAGCAGCAAATGCAAAgagaACGAGATCG
CGCCGCCAAAAGAAGGGAGCAGCTCCTTGAAGAGGCGGCAAACGAGCAAA
TGCCATTGTGGTTCAATGAATACCAGACCACGAaacccaaca
Run BLAST on NCBI

transcript from alignment at sc0003276:1735..2470+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042204 ID=TCONS_00042204|Name=TCONS_00042204|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at sc0003276:1735..2470+ (Clytia hemisphaerica)
TGTTCTTCATATAAAGAATGAAAGTTCTTCTAAACAATCAAACTCAATTA
TTAACAGTTAGAGGTAGAGGTAATAAACCATGGCTGAAGAACAAGAAAGG
CAAGCTGCTGAAGTAGCCATCCAGCAGCAAATGCAAAGtaagtaaaaatt
tttgttcattCCATATATGTGGAGGTTGGAGACATTGATTATTTCTTTTC
CTAAAAGACAAAGACATTtgggaattttttgaaaaaaattcaagattccA
TTTTTGTAAGACCTTATGTTTTTACCATTCCTTTCAACTTTTAAAGCTGT
TGTGTCTGTTGGGTAGAAAACAGTTTTTCCCCGATTTGATTAATTATAac
ttatatataattttttttttcaaggagaACGAGATCGCGCCGCCAAAAGA
AGGGAGCAGCTCCTTGAAGAGGCGGCAAACGAGCAAATGCGTAAGTATCA
ATTTGCCTATTGCCACATAAATTTTACTAAGTCTTGCTGCCTATGACAGA
GAAGGAATTGGTATGATCTCATTTCCAGGTTTCTGTAGCCTAAAAAGGAA
AATCATCAGCTTTATTTCTGTCATGTCAATTATGAAGCATTTAATTATAA
TATTGTGATAGTAGACATTATGTTACATTTCGTTGCTAAAGTTTTTGTTC
AATATAACACTTTTTatgtataaaaaaatatttgtttaaattTACAGCAT
TGTGGTTCAATGAATACCAGACCACGAaacccaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026066XLOC_026066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042204-exon-sc0003276-1491911889:1735..1871TCONS_00042204-exon-sc0003276-1491911889:1735..1871Clytia hemisphaericaexon
TCONS_00042204-exon-sc0003276-1510915933:1735..1871TCONS_00042204-exon-sc0003276-1510915933:1735..1871Clytia hemisphaericaexon
TCONS_00042204-exon-sc0003276-1575043694:1735..1871TCONS_00042204-exon-sc0003276-1575043694:1735..1871Clytia hemisphaericaexon
TCONS_00042204-exon-sc0003276-1491911889:2109..2174TCONS_00042204-exon-sc0003276-1491911889:2109..2174Clytia hemisphaericaexon
TCONS_00042204-exon-sc0003276-1510915933:2109..2174TCONS_00042204-exon-sc0003276-1510915933:2109..2174Clytia hemisphaericaexon
TCONS_00042204-exon-sc0003276-1575043694:2109..2174TCONS_00042204-exon-sc0003276-1575043694:2109..2174Clytia hemisphaericaexon
TCONS_00042204-exon-sc0003276-1491911889:2432..2470TCONS_00042204-exon-sc0003276-1491911889:2432..2470Clytia hemisphaericaexon
TCONS_00042204-exon-sc0003276-1510915933:2432..2470TCONS_00042204-exon-sc0003276-1510915933:2432..2470Clytia hemisphaericaexon
TCONS_00042204-exon-sc0003276-1575043694:2432..2470TCONS_00042204-exon-sc0003276-1575043694:2432..2470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003276supercontigsc0003276:1735..2470 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.964818	1.17457	0	4.47916	1.04833	2.20189	0.909132	1.76485	1.16014	1.15853	0	0.989149	1.06151	1.30769	0.670171	1.85176	0.968864	0	2.46454	0.998656	0	0	0	2.38859	3.82375	0.966727	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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