TCONS_00042202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042202
Unique NameTCONS_00042202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042202 ID=TCONS_00042202|Name=TCONS_00042202|organism=Clytia hemisphaerica|type=transcript|length=371bp
TCAAATTCTTTTCTTTCACTCCGTTTCCattcacatttttttaaaagcaG
CCAATTTGCTAAGGCTTGAGCCCTGAAtgaaacacccctttctcacagag
cCGGTAGGATTCATTCAGCAGGGGTAAACataacgaactgaaactcgata
gacctattcataaattacatcacgaacatcacttgtctcgttttgaaata
attaccatggtgattaactcaaactttatttgaaaatgaaagttaacCTT
TTCCGTAAGTAAACCCAAGATTTTCCTTTAGAAGAAAACCATTTCCGGCT
ATCCCGGGAAAACAGCGGGAAAATTCTGTAAAAGTGAGGAGGATTATAGG
AATTTGTGAAACGTATCCGAG
Run BLAST on NCBI

transcript from alignment at sc0003273:202..572

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042202 ID=TCONS_00042202|Name=TCONS_00042202|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at sc0003273:202..572 (Clytia hemisphaerica)
CTCGGATACGTTTCACAAATTCCTATAATCCTCCTCACTTTTACAGAATT
TTCCCGCTGTTTTCCCGGGATAGCCGGAAATGGTTTTCTTCTAAAGGAAA
ATCTTGGGTTTACTTACGGAAAAGgttaactttcattttcaaataaagtt
tgagttaatcaccatggtaattatttcaaaacgagacaagtgatgttcgt
gatgtaatttatgaataggtctatcgagtttcagttcgttatGTTTACCC
CTGCTGAATGAATCCTACCGgctctgtgagaaaggggtgtttcaTTCAGG
GCTCAAGCCTTAGCAAATTGGCtgcttttaaaaaaatgtgaatGGAAACG
GAGTGAAAGAAAAGAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026064XLOC_026064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042202-exon-sc0003273-1491911889:202..572TCONS_00042202-exon-sc0003273-1491911889:202..572Clytia hemisphaericaexon
TCONS_00042202-exon-sc0003273-1510915933:202..572TCONS_00042202-exon-sc0003273-1510915933:202..572Clytia hemisphaericaexon
TCONS_00042202-exon-sc0003273-1575043694:202..572TCONS_00042202-exon-sc0003273-1575043694:202..572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003273supercontigsc0003273:202..572 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.727774	0	0.233375	0.281557	1.05436	0.185361	0.457179	0	1.31267	0.291298	0	0.248709	0.667257	0	0	0.4656	0.243609	0.21174	0	0	0	0	0.209847	3.30319	1.92287	1.21536	0.495302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top