TCONS_00042193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042193
Unique NameTCONS_00042193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1096

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042193 ID=TCONS_00042193|Name=TCONS_00042193|organism=Clytia hemisphaerica|type=transcript|length=1096bp
TTCCACAAGGGGATGTAATGAAAAAGGAAAGGGTTATTGGAGAACCGGAC
ATGCACAACCCAAATTCATACGTCACTATTGCAGACTCGCTTCGCAATCT
TGGCCATAGGGCAGgcATTGTTTTCTACGGGACCGGTGATAGAGAATGGT
TGTTCGTTGAGGTTGATGGTACCATATATCAAATCATGATCGAACTGATC
AAGAATGTTATTTCATGCTCCTCGTGTAATGGAAGCTTTTACGGCCTTGA
CGATTTTACGGCGCATGACTGCAGTACCATTCCTCAACTCAAATATGAGT
TTGACTGGATTGTTCCTTTGCCTGGTCTACTGCATATGGAGATGAACTCT
TGCAAAGCATTTATGCGTTTAAACTGGGAGGTTTTTGGGAAAGAACTTGT
AACTCAGCTTGGATTCAAAACAGACAAGGCAAAACAGTTGATGGAAAATT
GCTCAGACCATCACAAGACCTGGCATTACATGGAACTACTTTTTTTCGCT
GGATTAGATGAGATCCTTGAGCCTTTACATGTGTGCCAATAAGTCAGCAA
CTATTGGAGATTTTTGGTCTTGGCTCAAGACGCAGGGTtcaaatttgcaa
tattttgcTAACATGATCTTGACTTATTTGTTTTCCCTTATGTTCTATCG
TGTGTCAGTCAGGAGAAACTATTGTGAAGGTGTATTGTTTGCTATGGAGA
AACTTTCGACCCTTTTTTTCGTACGCAACCATCCAATTTATCAAAAGATT
GTTCATTACAACCGTTTGGTCATGGCGCAAATGCCATTTGAAGTAAAAGA
AGTGTTAAAACCTGCCTTTTGCACTTCAACTACGGGAAACGTTGACTCTT
GCCAAGGCGGTGATGCCGTCCTGGAggagataaacaaaaaaataaagagg
tGGCTTTCAAATGTGGGGGTTCCAAGTGGGACCAGTTGGATTGAAACGAT
ACGATCTTTAGACAACCTGGAACAGttATGTGGCAACTTCCTCTCAAGCT
TTTCTCATCACAACATTGCTAAGCACGTGCATGCAATTTCAGAcaaagaa
atcattttcatgCGGGTCGTTCTTCGCGAATCGGAGTACCTTAGTG
Run BLAST on NCBI

protein sequence of TCONS_00042193-protein

>TCONS_00042193-protein ID=TCONS_00042193-protein|Name=TCONS_00042193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MRSLSLYMCANKSATIGDFWSWLKTQGSNLQYFANMILTYLFSLMFYRVS
VRRNYCEGVLFAMEKLSTLFFVRNHPIYQKIVHYNRLVMAQMPFEVKEVL
KPAFCTSTTGNVDSCQGGDAVLEEINKKIKRWLSNVGVPSGTSWIETIRS
LDNLEQLCGNFLSSFSHHNIAKHVHAISDKEIIFMRVVLRESEYLS
Run BLAST on NCBI

transcript from alignment at sc0003268:3963..7327-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042193 ID=TCONS_00042193|Name=TCONS_00042193|organism=Clytia hemisphaerica|type=transcript|length=3365bp|location=Sequence derived from alignment at sc0003268:3963..7327- (Clytia hemisphaerica)
TTCCACAAGGGGATGTAATGAAAAAGGAAAGGGTTATTGGAGAACCGGAC
ATGCACAACCCAAATTCATACGTCACTATTGCAGACTCGCTTCGCAATCT
TGGCCATAGGGCAGGTAATTGTGAGAGTCATTTGTAAAAGTAGCCTTTAA
GATTTGCATTGTCATTGTGTCGTCTTTTTTCATAAAATAGTGTGGATTTT
TCAAATAGAGATTTAAACCCGACCAGACACAAAACAATACTAGACGCTTG
CCATGGATTCCGTTACACGAGGTCTTTTTCTTTTTCATAGGCATTGTTTT
CTACGGGACCGGTGATAGAGAATGGTTGTTCGTTGAGGTTGATGGTACCA
TATATCAAATCATGATCGAACTGATCAAGAATGTTATTTCATGCTCCTCG
TGTAATGGAAGCTTTTACGGCCTTGACGATTTTACGGTACGGAACCTGTG
CCGACATTTAAGTCTGTGACAAATGAAGACTTTTCCATTCATTAAAATCC
CTATTATATCAAAACTTAATGCAAAGGCGATGAGTGTTTTGTATATTGTC
TTTAAATTTAGCTTTGCTGTTAGTGTTACCTTCCAGGTAAACCTATTGCT
ACAATAACTTTCTATCGGTTCAAAATTAACTTGGAAACGTAAAAATGTAT
AACACTCACAAAATTTCTTTAAATTGTCTCATCCAGGCGCATGACTGCAG
TACCATTCCTCAACTCAAATATGAGTTTGACTGGATTGTTCCTTTGCCTG
GTCTACTGCATATGGAGATGAACTCTTGCAAAGCATTTATGCGTTTAAAC
TGGGAGGTGATGTAACTTATATCCTTTATTGTTTTTCGCTAAAAGTCATA
TTAGTCATGTTTCAGTCACTAAAGAAAATATTCTAGTAATGTTCCAATTG
CCTCGACTGCAAAAATGCTGCTGTGATGCTCTAGCATATCCTCAACAACA
GTACAATTTTTATTAGCCTGTTCTAAAGAAATGTTTCATTTGTCAGGTTT
TTGGGAAAGAACTTGTAACTCAGCTTGGATTCAAAACAGACAAGGCAAAA
CAGTTGATGGAAAATTGCTCAGACCATCACAAGACCTGGCATTACATGGA
ACTACTTTTTTTCGCTGGATTAGATGAGATCCTTGAGCCTTTACATGTGT
GCCAATAAGTCAGCAACTATTGGAGATTTTTGGTCTTGGCTCAAGACGCA
GGGTTCAAATTTGCAATATTTTGCTAACATGATCTTGACTTATTTGTTTT
CCCTTATGTTCTATCGTGTGTCAGTCAGGAGAAACTATTGTGAAGGTATT
ATTTGATTATTTTGACGTTTTACTCAAACTTAAAGTCGTGATTAAAGGTA
CTGCATTTCCACAGGACCGCTACAGTGAAAGCCAGCACTAGCAACTGTTC
TGCAAATTTCACATTGCACGCGATATCTTCAAGCGACTAATGAAGTAAGA
TTTAATGATAGATAGTGCGGCCTTTCGTAATTCCGGGGGGAGGTACTTGG
GCAAGTGAAGAGTACGGTTATGTGCCGCCATTAAGGGTGTTTTTTTGGGA
CCTCTTAAAGTCCCAATAAGGGTCGTAAAAACCGCAATATTTCAACATTT
TTACTACTTTTTAGTCCTGCTAAGGGTGCGATGGTCCCGTCAGTTTGTAA
CCATAGTACCCCCCCCCCCGGGTTTGTAATATTCATAAGCAGAAAACTAC
AATCAAAATTTCCCTTCTTTACACAGGTGTATTGTTTGCTATGGAGAAAC
TTTCGACCCTTTTTTTCGTACGCAACCATCCAATTTATCAAAAGATTGTT
CATTACAACCGTTTGGTCATGGCGCAAATGCCATTTGAAGTAAAAGAAGT
GTTAAAACCTGCCTTTTGCACTTCAACTACGGGAAACGTTGACTCTTGCC
AAGGCGGTGAGCTTTTCTGCCTTTTTCGACCTTGATTATGTAAAAGTTAA
CCTGCTATTTTATTGAAGATAACTGATATGAAAATGTAAAATGACGGATA
GAGAGTTTTAGCACGGAGAATGGAAAATGGATTAATTATCATAGTCCCTC
ATTTTCATTCACAGGTGATGCCGTCCTGGAGGAGATAAACAAAAAAATAA
AGAGGTGGCTTTCAAATGTGGGGGTTCCAAGTGGGACCAGTTGGATTGAA
ACGATACGATCTTTAGACAACCTGGAACAGGTACTACATTTTTACTTATA
ATTTTAAAATTTAAATGTTACATTATTTGATATAAATAATATAAAAATAA
CAGTTAATCCTTTTTCTTACTGGGCGCATGATCTGGACAAAAAAATTGGA
TCTTTGCCACCTGTGGTCTACTCCGAACATTATGTCCAGTACATCTAACA
TGCACCCAGTAATCGCATCCAGCCTCCACCTCATCCTCATTTGTACATTC
TTTATCCTGGCCTTTTGTTTCTTCTTTGAAGCCACACACTATTGGCAAAT
TCATTGCAGAAAATTTGTGCTTCATTTTGATGTCTTCTGGTGACGAGAAC
ACAATGCTACAAATTTTGCATGTGTTCTCTCTGGCGTTTGGTATTTCCTG
TGGCTCTTTCTTTTTGGCCTTTCTTGGAATACCGATTATTTCAGGCATCT
TTGCTGAAGGGTTTTCTACTGTGTGATACCTTTTGCTGGCTTTTTGTTTC
GAATTTTCGCCAGGGTCTTTGCTTGAGCATGGGTCCGGAGTCTTACTTGA
ACAAGGGATTTGCGTAAGCTTGGGTGGCGAGTGTGTGGAGGGAACTATCC
TTTGTACCTGGTGAGTTTGTAGATGGTAAGATTATAGATACAAAAATATA
AACCGAGCGATTTAAAGGTCCAATTACAAAATTTACGAGTATCAAAAAAG
GTTTTACAAAGTTATAGTATGTTACCTCAGTAGAAGTAACGGCATTTTCT
ACCACTTCTGGCACGTTTCCTGCTTTTTCTTCTTCTTGATTTGAATTCTG
TAATGGATAGTAAATAGAAACTAAAAGTCGTATTTCACCGTATAATATTT
GGCTTATACCAAAGATTTCTTGCTTTTCTAGTAAAAGCCGAAACATAAAA
GAAAATGAAAAGATCAAATGATGTGCCATAAAATGGCAGACTATATGTGG
CCTAGGAGTCAAAGTTGCACTCACTATAGAGTTATATTTGCAAATAATAT
CTTCCGTCACTTTGGTTGTTACTTCGTACTTAACATTCACATCAAAGTCA
GCAGCCAATTCTCTAGCCTGATAAGAAAAATATTTTTATTATAGTTATGT
GGCAACTTCCTCTCAAGCTTTTCTCATCACAACATTGCTAAGCACGTGCA
TGCAATTTCAGACAAAGAAATCATTTTCATGCGGGTCGTTCTTCGCGAAT
CGGAGTACCTTAGTG

Coding sequence (CDS) from alignment at sc0003268:3963..7327-

>TCONS_00042193 ID=TCONS_00042193|Name=TCONS_00042193|organism=Clytia hemisphaerica|type=CDS|length=2352bp|location=Sequence derived from alignment at sc0003268:3963..7327- (Clytia hemisphaerica)
TTATGTGGCAACTTCCTCTCAAGCTTTTCTCATCACAACATTGCTAAGCA
CGTGCATGCAATTTCAGACAAAGAAATCATTTTCATGCGGGTCGTTCTTC
GCGAATCGGAGTACCTTAGTGTGATGCCGTCCTGGAGGAGATAAACAAAA
AAATAAAGAGGTGGCTTTCAAATGTGGGGGTTCCAAGTGGGACCAGTTGG
ATTGAAACGATACGATCTTTAGACAACCTGGAACAGGTGTATTGTTTGCT
ATGGAGAAACTTTCGACCCTTTTTTTCGTACGCAACCATCCAATTTATCA
AAAGATTGTTCATTACAACCGTTTGGTCATGGCGCAAATGCCATTTGAAG
TAAAAGAAGTGTTAAAACCTGCCTTTTGCACTTCAACTACGGGAAACGTT
GACTCTTGCCAAGGCGATGAGATCCTTGAGCCTTTACATGTGTGCCAATA
AGTCAGCAACTATTGGAGATTTTTGGTCTTGGCTCAAGACGCAGGGTTCA
AATTTGCAATATTTTGCTAACATGATCTTGACTTATTTGTTTTCCCTTAT
GTTCTATCGTGTGTCAGTCAGGAGAAACTATTGTGAAGTTATGTGGCAAC
TTCCTCTCAAGCTTTTCTCATCACAACATTGCTAAGCACGTGCATGCAAT
TTCAGACAAAGAAATCATTTTCATGCGGGTCGTTCTTCGCGAATCGGAGT
ACCTTAGTGTGATGCCGTCCTGGAGGAGATAAACAAAAAAATAAAGAGGT
GGCTTTCAAATGTGGGGGTTCCAAGTGGGACCAGTTGGATTGAAACGATA
CGATCTTTAGACAACCTGGAACAGGTGTATTGTTTGCTATGGAGAAACTT
TCGACCCTTTTTTTCGTACGCAACCATCCAATTTATCAAAAGATTGTTCA
TTACAACCGTTTGGTCATGGCGCAAATGCCATTTGAAGTAAAAGAAGTGT
TAAAACCTGCCTTTTGCACTTCAACTACGGGAAACGTTGACTCTTGCCAA
GGCGATGAGATCCTTGAGCCTTTACATGTGTGCCAATAAGTCAGCAACTA
TTGGAGATTTTTGGTCTTGGCTCAAGACGCAGGGTTCAAATTTGCAATAT
TTTGCTAACATGATCTTGACTTATTTGTTTTCCCTTATGTTCTATCGTGT
GTCAGTCAGGAGAAACTATTGTGAAGTTATGTGGCAACTTCCTCTCAAGC
TTTTCTCATCACAACATTGCTAAGCACGTGCATGCAATTTCAGACAAAGA
AATCATTTTCATGCGGGTCGTTCTTCGCGAATCGGAGTACCTTAGTGTGA
TGCCGTCCTGGAGGAGATAAACAAAAAAATAAAGAGGTGGCTTTCAAATG
TGGGGGTTCCAAGTGGGACCAGTTGGATTGAAACGATACGATCTTTAGAC
AACCTGGAACAGGTGTATTGTTTGCTATGGAGAAACTTTCGACCCTTTTT
TTCGTACGCAACCATCCAATTTATCAAAAGATTGTTCATTACAACCGTTT
GGTCATGGCGCAAATGCCATTTGAAGTAAAAGAAGTGTTAAAACCTGCCT
TTTGCACTTCAACTACGGGAAACGTTGACTCTTGCCAAGGCGATGAGATC
CTTGAGCCTTTACATGTGTGCCAATAAGTCAGCAACTATTGGAGATTTTT
GGTCTTGGCTCAAGACGCAGGGTTCAAATTTGCAATATTTTGCTAACATG
ATCTTGACTTATTTGTTTTCCCTTATGTTCTATCGTGTGTCAGTCAGGAG
AAACTATTGTGAAGTTATGTGGCAACTTCCTCTCAAGCTTTTCTCATCAC
AACATTGCTAAGCACGTGCATGCAATTTCAGACAAAGAAATCATTTTCAT
GCGGGTCGTTCTTCGCGAATCGGAGTACCTTAGTGTGATGCCGTCCTGGA
GGAGATAAACAAAAAAATAAAGAGGTGGCTTTCAAATGTGGGGGTTCCAA
GTGGGACCAGTTGGATTGAAACGATACGATCTTTAGACAACCTGGAACAG
GTGTATTGTTTGCTATGGAGAAACTTTCGACCCTTTTTTTCGTACGCAAC
CATCCAATTTATCAAAAGATTGTTCATTACAACCGTTTGGTCATGGCGCA
AATGCCATTTGAAGTAAAAGAAGTGTTAAAACCTGCCTTTTGCACTTCAA
CTACGGGAAACGTTGACTCTTGCCAAGGCGATGAGATCCTTGAGCCTTTA
CATGTGTGCCAATAAGTCAGCAACTATTGGAGATTTTTGGTCTTGGCTCA
AGACGCAGGGTTCAAATTTGCAATATTTTGCTAACATGATCTTGACTTAT
TTGTTTTCCCTTATGTTCTATCGTGTGTCAGTCAGGAGAAACTATTGTGA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026059XLOC_026059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042193-exon-sc0003268-1575043694:7214..7327TCONS_00042193-exon-sc0003268-1575043694:7214..7327Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1575043694:6892..7037TCONS_00042193-exon-sc0003268-1575043694:6892..7037Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1575043694:6522..6641TCONS_00042193-exon-sc0003268-1575043694:6522..6641Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1575043694:6033..6331TCONS_00042193-exon-sc0003268-1575043694:6033..6331Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1575043694:5422..5601TCONS_00042193-exon-sc0003268-1575043694:5422..5601Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1575043694:5148..5263TCONS_00042193-exon-sc0003268-1575043694:5148..5263Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1575043694:3963..4083TCONS_00042193-exon-sc0003268-1575043694:3963..4083Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1510915933:7214..7327TCONS_00042193-exon-sc0003268-1510915933:7214..7327Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1510915933:6892..7037TCONS_00042193-exon-sc0003268-1510915933:6892..7037Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1510915933:6522..6641TCONS_00042193-exon-sc0003268-1510915933:6522..6641Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1510915933:6033..6331TCONS_00042193-exon-sc0003268-1510915933:6033..6331Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1510915933:5422..5601TCONS_00042193-exon-sc0003268-1510915933:5422..5601Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1510915933:5148..5263TCONS_00042193-exon-sc0003268-1510915933:5148..5263Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1510915933:3963..4083TCONS_00042193-exon-sc0003268-1510915933:3963..4083Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1491911889:7214..7327TCONS_00042193-exon-sc0003268-1491911889:7214..7327Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1491911889:6892..7037TCONS_00042193-exon-sc0003268-1491911889:6892..7037Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1491911889:6522..6641TCONS_00042193-exon-sc0003268-1491911889:6522..6641Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1491911889:6033..6331TCONS_00042193-exon-sc0003268-1491911889:6033..6331Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1491911889:5422..5601TCONS_00042193-exon-sc0003268-1491911889:5422..5601Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1491911889:5148..5263TCONS_00042193-exon-sc0003268-1491911889:5148..5263Clytia hemisphaericaexon
TCONS_00042193-exon-sc0003268-1491911889:3963..4083TCONS_00042193-exon-sc0003268-1491911889:3963..4083Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042193-proteinTCONS_00042193-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003268supercontigsc0003268:3963..7327 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.161816	0.12787	0.462807	1.34797	0.808922	0.125248	0.283659	0.426209	0.159606	0.248629	0	0	0	0	0	0	0	0	0	0	0.085887	0.114978	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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