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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042192 ID=TCONS_00042192|Name=TCONS_00042192|organism=Clytia hemisphaerica|type=transcript|length=1553bp
TGTGATCTTCCAGTGTGCCAGAGTCATTTTTCCcacattttaatttttac
tcACTCAGAATACTGGAATATTTTGGAACATCAAGCCACATGGAACCACA
TCAAGCCATGTCCCATGCGAAAAACACACGCAGTGTTGATGACCCCTATA
GCGGCCCAATATAAAAACTATAAACATTATTGATGTGCCCAATATAATAT
AGACACATAATTTCGAGGACACAATATGCCCGCTACAaatgggtttcaaa
acatcggaactttgcatttagtgggtgcgaatcccaccggtggcgatctg
tcggtaagtcattcagtaagttagaaaacatagaaaataactcACAAAGA
aacagaaagtcagaaaaactacgaacaagagactggaaagtacgaaataa
gtccagatctgtctttcgtctttgtgaagaagccacgaccgtaAGGTCTG
GTGGAAAGTGACGAGTGTCAAGACCCTATTCTCTTTTTATGAAGGACTTT
TGGtataaaaacatataaaaatgaGTAATCGTAATAGAAATAACCTTCCT
AACAATCTTGCACAACTACAGAATCTCATCAAAAGAGATCCAGAGTCATA
CAATACAGGGAAGAATTTCTACAACAATGGAAACATTTTCAatccaattt
ggaaattttcaaactggaTCCAACCAGGGAGGCTGAAGCTGTAGAAGATG
TCATGAAATTCATTGCCCAGGCTAGAGAATTGGCTGCTGACTTTGATGTG
AATGTTAAGTACGAAGTAACAACCAAAGTGACGGAAGATATTATTTGCAA
ATATAACTCTATAAATTCAaatcaagaagaagaaaaagcagGAAACGTGC
CAGAAGTGGTAGAAAATGCCGTTACTTCTACTGAGGTACAAAGGATAGTT
CCCTCCACACACTCGCCACCCAAGCTTACGCAAATCCCTTGTTCAAGTAA
GACTCCGGACCCATGCTCAAGCAAAGACCCTGgcgaaaattcgaaacaaa
aagccAGCAAAAGGTATCACACAGTAGAAAACCCTTCAGCAAAGATGCCT
GAAATAATCGGTATTCCAAGAAAGGCCAAAAAGAAAGAGCCACAGGAAAT
ACCAAACGCCAGAGAGAACACATGCAAAATTTGTAGCATTGTGTTCTCGT
CACCAGAAGACATCAAAATGAAGCACAAATTTTCTGCAATGAATTTGCCA
ATAGTGTGTGGCTTCaaagaagaaacaaaaggccAGGATAAAGAATGTAC
AAATGAGGATGAGGTGGAGGCTGGATGCGATTACTGGGTGCATGTTAGAT
GTACTGGACATAATGTTCGGAGTAGACCACAGGTGGCAAAGATCCAATTT
TTTTGTCCAGATCATGCGCCCAGTAAGAAAAAGGATTAACtgttattttt
atattatttatatcaaataatgtaacatttaaattttaaaattataagTA
AAAATGTAGTACCTGTTCCAGGTTGTCTAAAGATCGTATCGTTTCAATCC
AACTGGTCCCACTTGGAACCCCCACATTTGAAAGCCacctctttattttt
ttg Run BLAST on NCBI protein sequence of TCONS_00042192-protein >TCONS_00042192-protein ID=TCONS_00042192-protein|Name=TCONS_00042192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MKFIAQARELAADFDVNVKYEVTTKVTEDIICKYNSINSNQEEEKAGNVP
EVVENAVTSTEVQRIVPSTHSPPKLTQIPCSSKTPDPCSSKDPGENSKQK
ASKRYHTVENPSAKMPEIIGIPRKAKKKEPQEIPNARENTCKICSIVFSS
PEDIKMKHKFSAMNLPIVCGFKEETKGQDKECTNEDEVEAGCDYWVHVRC
TGHNVRSRPQVAKIQFFCPDHAPSKKKD Run BLAST on NCBI transcript from alignment at sc0003268:1..5238+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042192 ID=TCONS_00042192|Name=TCONS_00042192|organism=Clytia hemisphaerica|type=transcript|length=5238bp|location=Sequence derived from alignment at sc0003268:1..5238+ (Clytia hemisphaerica)
TGTGATCTTCCAGTGTGCCAGAGTCATTTTTCCcacattttaatttttac
tcACTCAGAATACTGGAATATTTTGGAACATCAAGCCACATGGAACCACA
TCAAGCCATGTCCCATGCGAAAAACACACGCAGTGTTGATGACCCCTATA
GCGGCCCAATATAAAAACTATAAACATTATTGATGTGCCCAATATAATAT
AGACACATAATTTCGAGGACACAATATGCCCGCTACAaatgggtttcaaa
acatcggaactttgcatttagtgggtgcgaatcccaccggtggcgatctg
tcggtaagtcattcagtaagttagaaaacatagaaaataactcACAAAGA
aacagaaagtcagaaaaactacgaacaagagactggaaagtacgaaataa
gtccagatctgtctttcgtctttgtgaagaagccacgaccgtaAGGTCTG
GTGGAAAGTGACGAGTGTCAAGACCCTATTCTCTTTTTATGAAGGACTTT
TGGtataaaaacatataaaaatgaGTAATCGTAATAGAAATAACCTTCCT
AACAATCTTGCACAACTACAGAATCTCATCAAAAGAGATCCAGAGTCATA
CAATACAGGGAAGAATTTCTACAACAATGGAAACATTTTCAatccaattt
ggaaattttcaaactggaTCCAACCAGGGAGGCTGAAGCTGTAGAAGATG
TCATGAAATTCATTGCCCAGGTATAAATTGTAATCAGTTTGAGgctgaga
atttttttttagaaatattaattttatcatgatgacaaaatgttataaaa
tccagacccgatcaatcaaacaaccagacggtgtcaatcgaacaacttcg
aacaaaaatcgcaatcgaactaatcgaacgtaatcgaacgcgatcgaata
attgcgattcgatcgtcaaacgtaatcgaatctcaatcgaacggtcgatt
cctgggtaatattcgattgcgttcgagtaaggttagattggttcgattga
ttgttgaccatgttcgattggttcgattgattgtcagttacattggatta
atcttcgatatcgttcgattacgattatgtacgatgagtttgattgcgat
caaattaaatttgttcactctgttagagcttcttaGCGTGCGCGGCGgag
cgcttaagtaccatactaaggcgaataaaatctaatacaattgaatcaat
cgaacgtaatcgaatacaatcgaacgtaatcgaatacaatcgaacgtaat
cgaatacaatcgaacgtaatcgaagcaatcgaacagcaaatcctgggtaa
tattcgattgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNgcgattcgattgcgttcgacaatcgaatttcaat
cggtcgattgcgttcgatttggttcgactggttcgatcgtcgattccgtt
cgattgagatcgtctggaaacAAGTCGAACTAACTCtttttaacttattt
attttattttatcctttatgtttaaaatcacgaaaatgtacTTATGTATT
ATGTGATAGTTCAATAGANtttcggtaatcacggtaatcacgcccttacg
ccacaacatatcgccctttatagcgccacaccataataagacaatgtata
caatataccctcaggtaatggtaattgcagtaatttcggtaatcacggta
attacacccttacagttagtcacactagcttcCCACCAAATTGCGtttca
aagattaatgctgcgaagtCGCTTTATCATTTACTTGACTCACGAGCAAA
agaatgcgccgcaaaacttctaaagggatttacGAAAAAATAaaccggcg
ctttttaatgaaatttacataGAGGAAATCCTTGACAAATTCCCTAAATT
TTGAGCCAAAGATGAAAGATTTAGGGCCAAGCCAAcctcaaaaactaatt
ttaagaagaacttcacaagaaaaagatctacgggtgAGTGACAAGCAACT
AGATCCGCAAAGCTGTGACATTTATCTTTAATTAAGAAAGTTAATAGGAG
TAACGTCTTTTTAACAATGCTATTGTTTGTTATCTCCCTCCTTGGAACAT
TTTTCTAAGTCTCATGGGAAACATTTCGGCCGTAATGAACTAAGAACTAA
CTGATAATGTATATGAGAAAAATAGATAAATACGATGGTCGTAGTAATTT
TGAAAGTAAAGTAGTGAATAGTGTTGTTAACAAGTAAGCGTCATGAGTgg
taaaggaaagaaaaagtgaGGTAATGTGCCAAATTTGTAACGTTGGAATT
ATATTTTCCAGATATTTGTGGTAAATTTCATTTAGTCGAGCCAACACTGT
TATCTTTCATCTTAATTTGTCCTCCAACGTCTATTATGAGATCTGTTGCA
GGTCAAAATTTGCGATTATTTAATAGGGGGGTTGTTTGTACTTTTAGGGT
GTGACGGCCtaggcccttttttagtacgatattacgggatttgacggaAA
AAAAGACAGGAagaaaacagttttttaaaatcagatggtgacggtattta
gccttATCTTTTGACAGTGTTCCGGTATTTTAACCTCAACAACCggtgtg
tttttttattatttttttttattcatggGCGGATTCTGGAATTCCGTGAA
AACGGTATAAAGGCTAATAAGGCTACATATTAGAAATATGTACGATTCTT
TTTATAGCTCTACTTGATATAATATGTTGACCATATATTGACCATGTGTA
TTCATAAATACTATTTGCAACCGTATGTTGACAATCAGGTCCTCGTTTGt
atttatcaaaattagaatATTTTCTCAATCCTGCCCTCCCGTTTATGGCG
TGATTATGTATCTAGTTGAAATTCATACCTACTTAATGTATTTCAGGGGT
TGCCAAAAAGGCGAAAGAATTAGACACAAACAGGTTTGATAACCGATTGG
AGACATTTCACCGAAAGGTTTGTGTTTGCGAAGCGGTATTTTTATAACTT
CATACGTTTTCTTTTgggtaaaaattaaaaaaagactatTAAAACTACAA
ATCCATATAATACATATTCTATTTACAGTGAATCATTTTCTCGGTCTACA
TTCACAACACCTACTGCTGCTGAGTTAGAAACTTCTATATCAATTTGGCG
GTTGGTGAATGCCTAAAAGTTCTTCCAACGTGGCTATTAACTCTGGCTTT
TTCAGggtgttttttatttcttcatatTTAGCCGTTTTCAAAGGATTGTT
TAGGTTCGTTAGACATTGCTCGATGCTTTGTTTCAGCTCCCTGAAATGAA
AacgtaaataaaagaaaaaactaaacgTATACGGTTGGGAAGCTATGATC
AACGATACCAATTATAAATTCAACATAATGAAATCCTGGGCGTGGGTCGT
TTTAGAGGCATTTGGTTGATTACAGGTTCTTTATTTGAACATTCGGCACT
TACGTAATTGTTAAGTTTTTAAGTGACTctccttcttctttttccttgcT
GGTGACATAAACATATCTGTAAAAGAAGTTAAGAATTTTGCAGGCTAGGT
GTAgcaaatatttaaataaattcCATGTGTAAAGGTTCTACCGCCTattc
tcttgaattttttatttttcatgctCAAAAGTAGCCATGATCCCTAAAGA
AAATGATGCTAGAAGATAACAATGtctgtcaatcaaaatttaCTTCATCT
TTTGGCCTAAAGCCGGTGTTTCGTCTTTGCCTAGCTTCAGAAGCTCCTTG
TATTTTTTTCGATTGGCGGCATCGATGTTGTGGAACTGTAACAAGTCTAC
TTCCAGCTCCAAATGCGTCATCGATGTAAACTTTTCAGCTTAAAAAAGAG
AGAGCCATAGTCAATTAAAAATTCCCACCTATTCCAAGTAGCCCGATTCT
CATCCCAATTTACATTTGTTCTCTTCAtcactgagacagggttgtCATAA
AATAAAACTTACCACTAAGGTACTCCGATTCGCGAAGAACGACCCGcatg
aaaatgatttctttgTCTGAAATTGCATGCACGTGCTTAGCAATGTTGTG
ATGAGAAAAGCTTGAGAGGAAGTTGCCACATaactataataaaaatattt
ttcttatcaGGCTAGAGAATTGGCTGCTGACTTTGATGTGAATGTTAAGT
ACGAAGTAACAACCAAAGTGACGGAAGATATTATTTGCAAATATAACTCT
ATAGTGAGTGCAACTTTGACTCCTAGGCCACATATAGTCTGCCATTTTAT
GGCACATCATTTgatcttttcattttcttttatgTTTCGGCTTTTACTAG
AAAAGCAAGAAATCTTTGGTATAAGCCAAATATTATACGGTGAAATACGA
CTTTTAGTTTCTATTTACTATCCATTACAGAATTCAaatcaagaagaaga
aaaagcagGAAACGTGCCAGAAGTGGTAGAAAATGCCGTTACTTCTACTG
AGGTAACATACTATAACTTTGTAAAACCTTTTTTGATACTCGTAAATTTT
GTAATTGGACCTTTAAATCGCTcggtttatatttttgtatcTATAATCTT
ACCATCTACAAACTCACCAGGTACAAAGGATAGTTCCCTCCACACACTCG
CCACCCAAGCTTACGCAAATCCCTTGTTCAAGTAAGACTCCGGACCCATG
CTCAAGCAAAGACCCTGgcgaaaattcgaaacaaaaagccAGCAAAAGGT
ATCACACAGTAGAAAACCCTTCAGCAAAGATGCCTGAAATAATCGGTATT
CCAAGAAAGGCCAAAAAGAAAGAGCCACAGGAAATACCAAACGCCAGAGA
GAACACATGCAAAATTTGTAGCATTGTGTTCTCGTCACCAGAAGACATCA
AAATGAAGCACAAATTTTCTGCAATGAATTTGCCAATAGTGTGTGGCTTC
aaagaagaaacaaaaggccAGGATAAAGAATGTACAAATGAGGATGAGGT
GGAGGCTGGATGCGATTACTGGGTGCATGTTAGATGTACTGGACATAATG
TTCGGAGTAGACCACAGGTGGCAAAGATCCAATTTTTTTGTCCAGATCAT
GCGCCCAGTAAGAAAAAGGATTAACtgttatttttatattatttatatca
aataatgtaacatttaaattttaaaattataagTAAAAATGTAGTACCTG
TTCCAGGTTGTCTAAAGATCGTATCGTTTCAATCCAACTGGTCCCACTTG
GAACCCCCACATTTGAAAGCCacctctttatttttttg Coding sequence (CDS) from alignment at sc0003268:1..5238+ >TCONS_00042192 ID=TCONS_00042192|Name=TCONS_00042192|organism=Clytia hemisphaerica|type=CDS|length=2748bp|location=Sequence derived from alignment at sc0003268:1..5238+ (Clytia hemisphaerica)
ATGAAATTCATTGCCCAGGCTAGAGAATTGGCTGCTGACTTTGATGTGAA
TGTTAAGTACGAAGTAACAACCAAAGTGACGGAAGATATTATTTGCAAAT
ATAACTCTATAAATTCAaatcaagaagaagaaaaagcagGAAACGTGCCA
GAAGTGGTAGAAAATGCCGTTACTTCTACTGAGGTACAAAGGATAGTTCC
CTCCACACACTCGCCACCCAAGCTTACGCAAATCCCTTGTTCAAGTAAGA
CTCCGGACCCATGCTCAAGCAAAGACCCTGgcgaaaattcgaaacaaaaa
gccAGCAAAAGGTATCACACAGTAGAAAACCCTTCAGCAAAGATGCCTGA
AATAATCGGTATTCCAAGAAAGGCCAAAAAGAAAGAGCCACAGGAAATAC
CAAACGCCAGAGAGAACACATGCAAAATTTGTAGCATTGTGTTCTCGTCA
CCAGAAGACATCAAAATGAAGCACAAATTTTCTGCAATGAATTTGCCAAT
AGTGTGTGGCTTCaaagaagaaacaaaaggccAGGATAAAGAATGTACAA
ATGAGGATGAGGTGGAGGCTGGATGCGATTACTGGGTGCATGTTAGATGT
ACTGGACATAATGTTCGGAGTAGACCACAGGTGGCAAAGATCCAATTTTT
TTGTCCAGATCATGCGCCCAGTAAGAAAAAGGATTAAATGAAATTCATTG
CCCAGGCTAGAGAATTGGCTGCTGACTTTGATGTGAATGTTAAGTACGAA
GTAACAACCAAAGTGACGGAAGATATTATTTGCAAATATAACTCTATAAA
TTCAaatcaagaagaagaaaaagcagGAAACGTGCCAGAAGTGGTAGAAA
ATGCCGTTACTTCTACTGAGGTACAAAGGATAGTTCCCTCCACACACTCG
CCACCCAAGCTTACGCAAATCCCTTGTTCAAGTAAGACTCCGGACCCATG
CTCAAGCAAAGACCCTGgcgaaaattcgaaacaaaaagccAGCAAAAGGT
ATCACACAGTAGAAAACCCTTCAGCAAAGATGCCTGAAATAATCGGTATT
CCAAGAAAGGCCAAAAAGAAAGAGCCACAGGAAATACCAAACGCCAGAGA
GAACACATGCAAAATTTGTAGCATTGTGTTCTCGTCACCAGAAGACATCA
AAATGAAGCACAAATTTTCTGCAATGAATTTGCCAATAGTGTGTGGCTTC
aaagaagaaacaaaaggccAGGATAAAGAATGTACAAATGAGGATGAGGT
GGAGGCTGGATGCGATTACTGGGTGCATGTTAGATGTACTGGACATAATG
TTCGGAGTAGACCACAGGTGGCAAAGATCCAATTTTTTTGTCCAGATCAT
GCGCCCAGTAAGAAAAAGGATTAAATGAAATTCATTGCCCAGGCTAGAGA
ATTGGCTGCTGACTTTGATGTGAATGTTAAGTACGAAGTAACAACCAAAG
TGACGGAAGATATTATTTGCAAATATAACTCTATAAATTCAaatcaagaa
gaagaaaaagcagGAAACGTGCCAGAAGTGGTAGAAAATGCCGTTACTTC
TACTGAGGTACAAAGGATAGTTCCCTCCACACACTCGCCACCCAAGCTTA
CGCAAATCCCTTGTTCAAGTAAGACTCCGGACCCATGCTCAAGCAAAGAC
CCTGgcgaaaattcgaaacaaaaagccAGCAAAAGGTATCACACAGTAGA
AAACCCTTCAGCAAAGATGCCTGAAATAATCGGTATTCCAAGAAAGGCCA
AAAAGAAAGAGCCACAGGAAATACCAAACGCCAGAGAGAACACATGCAAA
ATTTGTAGCATTGTGTTCTCGTCACCAGAAGACATCAAAATGAAGCACAA
ATTTTCTGCAATGAATTTGCCAATAGTGTGTGGCTTCaaagaagaaacaa
aaggccAGGATAAAGAATGTACAAATGAGGATGAGGTGGAGGCTGGATGC
GATTACTGGGTGCATGTTAGATGTACTGGACATAATGTTCGGAGTAGACC
ACAGGTGGCAAAGATCCAATTTTTTTGTCCAGATCATGCGCCCAGTAAGA
AAAAGGATTAAATGAAATTCATTGCCCAGGCTAGAGAATTGGCTGCTGAC
TTTGATGTGAATGTTAAGTACGAAGTAACAACCAAAGTGACGGAAGATAT
TATTTGCAAATATAACTCTATAAATTCAaatcaagaagaagaaaaagcag
GAAACGTGCCAGAAGTGGTAGAAAATGCCGTTACTTCTACTGAGGTACAA
AGGATAGTTCCCTCCACACACTCGCCACCCAAGCTTACGCAAATCCCTTG
TTCAAGTAAGACTCCGGACCCATGCTCAAGCAAAGACCCTGgcgaaaatt
cgaaacaaaaagccAGCAAAAGGTATCACACAGTAGAAAACCCTTCAGCA
AAGATGCCTGAAATAATCGGTATTCCAAGAAAGGCCAAAAAGAAAGAGCC
ACAGGAAATACCAAACGCCAGAGAGAACACATGCAAAATTTGTAGCATTG
TGTTCTCGTCACCAGAAGACATCAAAATGAAGCACAAATTTTCTGCAATG
AATTTGCCAATAGTGTGTGGCTTCaaagaagaaacaaaaggccAGGATAA
AGAATGTACAAATGAGGATGAGGTGGAGGCTGGATGCGATTACTGGGTGC
ATGTTAGATGTACTGGACATAATGTTCGGAGTAGACCACAGGTGGCAAAG
ATCCAATTTTTTTGTCCAGATCATGCGCCCAGTAAGAAAAAGGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042192-exon-sc0003268-1491911889:1..720 | TCONS_00042192-exon-sc0003268-1491911889:1..720 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1510915933:1..720 | TCONS_00042192-exon-sc0003268-1510915933:1..720 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1575043694:1..720 | TCONS_00042192-exon-sc0003268-1575043694:1..720 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1491911889:4111..4203 | TCONS_00042192-exon-sc0003268-1491911889:4111..4203 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1510915933:4111..4203 | TCONS_00042192-exon-sc0003268-1510915933:4111..4203 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1575043694:4111..4203 | TCONS_00042192-exon-sc0003268-1575043694:4111..4203 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1491911889:4381..4452 | TCONS_00042192-exon-sc0003268-1491911889:4381..4452 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1510915933:4381..4452 | TCONS_00042192-exon-sc0003268-1510915933:4381..4452 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1575043694:4381..4452 | TCONS_00042192-exon-sc0003268-1575043694:4381..4452 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1491911889:4571..5238 | TCONS_00042192-exon-sc0003268-1491911889:4571..5238 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1510915933:4571..5238 | TCONS_00042192-exon-sc0003268-1510915933:4571..5238 | Clytia hemisphaerica | exon |
| TCONS_00042192-exon-sc0003268-1575043694:4571..5238 | TCONS_00042192-exon-sc0003268-1575043694:4571..5238 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003268 | supercontig | sc0003268:1..5238 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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