TCONS_00042190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042190
Unique NameTCONS_00042190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042190 ID=TCONS_00042190|Name=TCONS_00042190|organism=Clytia hemisphaerica|type=transcript|length=347bp
ACCTACAgtcttgaaaatatttaggtccCAATGATCTAATTGCAACATTA
GTTACTttacagtgaatcactgttcaaaatttgagaccaaaaggactatt
atataaaaagttattggagaaaaaccattttgtaggaaCCATAGACAGCG
TACTTTCAACACGAAAAGTTTCAGCCTAAAATCCTACCTAAATTTTCAGA
TAGAGGATATCTctattttttgtaggttttaaagGGGTATCCAATGGTAA
TAATTTTGCACTCGCTTATAGCTAGAAAAAAGTACAGATTTTAAGGTGAA
GGCTGGGAAAAGGTacatttttcagctcaaaatacCTGGAAAAAAGG
Run BLAST on NCBI

transcript from alignment at sc0003267:1785..2131

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042190 ID=TCONS_00042190|Name=TCONS_00042190|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at sc0003267:1785..2131 (Clytia hemisphaerica)
CCTTTTTTCCAGgtattttgagctgaaaaatgtACCTTTTCCCAGCCTTC
ACCTTAAAATCTGTACTTTTTTCTAGCTATAAGCGAGTGCAAAATTATTA
CCATTGGATACCCctttaaaacctacaaaaaatagAGATATCCTCTATCT
GAAAATTTAGGTAGGATTTTAGGCTGAAACTTTTCGTGTTGAAAGTACGC
TGTCTATGGttcctacaaaatggtttttctccaataactttttatataat
agtccttttggtctcaaattttgaacagtgattcactgtaaAGTAACTAA
TGTTGCAATTAGATCATTGggacctaaatattttcaagacTGTAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026056XLOC_026056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042190-exon-sc0003267-1491911889:1785..2131TCONS_00042190-exon-sc0003267-1491911889:1785..2131Clytia hemisphaericaexon
TCONS_00042190-exon-sc0003267-1510915933:1785..2131TCONS_00042190-exon-sc0003267-1510915933:1785..2131Clytia hemisphaericaexon
TCONS_00042190-exon-sc0003267-1575043694:1785..2131TCONS_00042190-exon-sc0003267-1575043694:1785..2131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003267supercontigsc0003267:1785..2131 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.522562	0.501396	0.582168	2.01192	2.45293	1.91773	2.9747	0.618863	0.64992	0.536688	0.814789	0.684867	0.683915	2.84101	0.583924	0.93996	0.964962	0.989055	0.273286	0.285975	0.497128	1.09117	0	0.803961	0	0.985366	2.11508	1.88106	0.427534	0.29072
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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