TCONS_00042188 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042188
Unique NameTCONS_00042188
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042188 ID=TCONS_00042188|Name=TCONS_00042188|organism=Clytia hemisphaerica|type=transcript|length=442bp
ACTCACGAATAAAAGTTGGTAGGGATGTAATAGCTGTTTCGAGTTACAGA
AGAAATGATAACCGCaatcaattcatttttatttcgtatcaaaatcaaaa
tcacccTGGATTTGTTACAGATATTGTCGATGTTCATGTTAACATTTCTG
GAAATGAGTTTCACAtccctttttttcaaatgagtCTTTTTAACACTCAC
CAGTATAAGAACTTTTATGGAGAAGACTGTCCTATGAAAATTTGGAACAC
CACCATTATGACAGAAATCTTTGTCCCTGTAGTGGCCATGAAAGGAAAAT
GTGTTGTCATTAAAGACGATTGTAAGTTTGATCGTATACCAATAGCAAAT
GGCCGAGTGGCTAGAGCTAACTTTGAAGATAACGTTTATTTTGTATTAGA
AATGTAGATTTTAATAGTAGATAGATATAGGCTAAGAATTTA
Run BLAST on NCBI

protein sequence of TCONS_00042188-protein

>TCONS_00042188-protein ID=TCONS_00042188-protein|Name=TCONS_00042188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
SRIKVGRDVIAVSSYRRNDNRNQFIFISYQNQNHPGFVTDIVDVHVNISG
NEFHIPFFQMSLFNTHQYKNFYGEDCPMKIWNTTIMTEIFVPVVAMKGKC
VVIKDDCKFDRIPIANGRVARANFEDNVYFVLEM
Run BLAST on NCBI

transcript from alignment at sc0003266:4483..4924

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042188 ID=TCONS_00042188|Name=TCONS_00042188|organism=Clytia hemisphaerica|type=transcript|length=442bp|location=Sequence derived from alignment at sc0003266:4483..4924 (Clytia hemisphaerica)
TAAATTCTTAGCCTATATCTATCTACTATTAAAATCTACATTTCTAATAC
AAAATAAACGTTATCTTCAAAGTTAGCTCTAGCCACTCGGCCATTTGCTA
TTGGTATACGATCAAACTTACAATCGTCTTTAATGACAACACATTTTCCT
TTCATGGCCACTACAGGGACAAAGATTTCTGTCATAATGGTGGTGTTCCA
AATTTTCATAGGACAGTCTTCTCCATAAAAGTTCTTATACTGGTGAGTGT
TAAAAAGactcatttgaaaaaaagggaTGTGAAACTCATTTCCAGAAATG
TTAACATGAACATCGACAATATCTGTAACAAATCCAgggtgattttgatt
ttgatacgaaataaaaatgaattgattGCGGTTATCATTTCTTCTGTAAC
TCGAAACAGCTATTACATCCCTACCAACTTTTATTCGTGAGT

Coding sequence (CDS) from alignment at sc0003266:4483..4924

>TCONS_00042188 ID=TCONS_00042188|Name=TCONS_00042188|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0003266:4483..4924 (Clytia hemisphaerica)
CTACATTTCTAATACAAAATAAACGTTATCTTCAAAGTTAGCTCTAGCCA
CTCGGCCATTTGCTATTGGTATACGATCAAACTTACAATCGTCTTTAATG
ACAACACATTTTCCTTTCATGGCCACTACAGGGACAAAGATTTCTGTCAT
AATGGTGGTGTTCCAAATTTTCATAGGACAGTCTTCTCCATAAAAGTTCT
TATACTGGTGAGTGTTAAAAAGactcatttgaaaaaaagggaTGTGAAAC
TCATTTCCAGAAATGTTAACATGAACATCGACAATATCTGTAACAAATCC
AgggtgattttgattttgatacgaaataaaaatgaattgattGCGGTTAT
CATTTCTTCTGTAACTCGAAACAGCTATTACATCCCTACCAACTTTTATT
CGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026054XLOC_026054Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042188-proteinTCONS_00042188-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042188-exon-sc0003266-1491911889:4483..4924TCONS_00042188-exon-sc0003266-1491911889:4483..4924Clytia hemisphaericaexon
TCONS_00042188-exon-sc0003266-1510915933:4483..4924TCONS_00042188-exon-sc0003266-1510915933:4483..4924Clytia hemisphaericaexon
TCONS_00042188-exon-sc0003266-1575043694:4483..4924TCONS_00042188-exon-sc0003266-1575043694:4483..4924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003266supercontigsc0003266:4483..4924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07994	0.637942	0.0331175	0	0	0.997711	0	1.01848	0	0.512389	0.582415	1.07656	0.231171	1.10166	0.268408	0.230126	0	0.527358	0.579269	0	0.486138	1.47539	0.881088	0.28723	0.666619	0	1.3155	0.763264	0.378882	0.743722
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042188 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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