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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042180 ID=TCONS_00042180|Name=TCONS_00042180|organism=Clytia hemisphaerica|type=transcript|length=850bp
TACCAGGCAGAATAGACGAGTGTAAAGACATGGAAGAATATCATAGCGAG
ACATTGGAAAGCAAATTTTTTGCTCCCTTTGCAAACATACCTTACGTTTC
TAATGTACATTACGCTCGGCCTTCCGATGTTTTTATACCGAAaggttatt
ttcaaaacattgaagagattaaaaatttcaaattttttgaagatgaTACA
GTTATATGTGGATTTCTTAAAACAGGTACGAATTGGTGCGAAAGGATTGT
TTGGGCACTCCGTAATGATATCAAATTGAACATTCAACATGCACCCCCTG
TATCAGTTTTCGACATTGTTATGGGTATAGGAGATTTTGATAGTGACAAC
AACAAAGCTCACGATGAGATTTTTTCGTCCATGAAACGACCACGTGTTAT
CAAAATGCATCTTACATATGAATTATTACCAAGACAGTTTCAACAAAAGC
AACCTAAGGAAGGTCATAGTTCAACAGTCGAAGCAGCTCACAAAGGAAAG
ACAATGTTTAACAAGGGACAAGCTGGATCGTGGAAGGTTCTATTTACACC
AGCGATGACAAAACAAATGGAAGAATGGGAATCAAAATGGTTGAGAGATA
CTGATCTTGAACTTATTTATGAATAGTACTGGAGTATCGAAACATGTAAA
ATAAGAGttagataaaattttgaaacgaGTAAAATGaaacatacacgctt
ttttttacaagaatagtgtactttgaatgagggtcaagtattcttaagaa
attggcaaaattgagggtgaaatcttcttaacgtattcttgactttttta
caaacatgagaaaatcaatttgagggtttggacttttgagtgaacatttg Run BLAST on NCBI transcript from alignment at sc0003263:4132..10180+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042180 ID=TCONS_00042180|Name=TCONS_00042180|organism=Clytia hemisphaerica|type=transcript|length=6049bp|location=Sequence derived from alignment at sc0003263:4132..10180+ (Clytia hemisphaerica)
TACCAGGCAGAATAGACGAGTGTAAAGACATGGAAGAATATCATAGCGAG
ACATTGGAAAGCAAATTTTTTGCTCCCTTTGCAAACATACCTTACGTTTC
TAATGTACATTACGCTCGGCCTTCCGATGTTTTTATACCGAAaggttatt
ttcaaaacattgaagagattaaaaatttcaaattttttgaagatgaTACA
GTTATATGTGGATTTCTTAAAACAGGTAGCGTTAGTATTGAACGTTTTTT
TTGTTCGCACATGTGTATATTGTGCCTTgatatttcgattttttatACCT
TCTGGACGTATAATTAACCCCTTGACAATATAATCTTCTACCCCATTTGT
ACAGTGTTTTGTTCGTGAAGAGTCATATCATAtcattttttgccaatttc
gatcATTTCCGCGAAAAATAGAAATCCAATTCTCGgcgaaaatttcaaag
aaaaatgaaagaaatcgaaaaaagaGACTGATTGAGCGATTCAGAAAAAG
tcttattttgagaaaatttatcCGCTGAAGGAACTCTGAAGCTGTTGGGT
TGTCGAGGTAGGTAGGAAgtataccttaagagaagaaattttggcgggaa
gaaattttagcgaatgaGCCCATTCGCCAATTTTAGTgcaatttggcgga
atttattttgccgatttaaaaaaaattctaaatttggcgagacataattt
tggcgaacgacccattttttgttgaatattaaGCTTAAAAAGGATGAAAA
AGGGTTTCTagtaaaagaaatttaaatttggcgggaattaatTTAGGCGA
ATGGCCCATATATCTAAATTTAGCGGGAAGAAATTtcggcgaatttggcg
aatttttgtggcaattcgccaaattcgccaaaatttcttctcttaaggta
agtTCAGGTTCTCGTTTTGAAGTTCACACTTCTTAGACAGTTTTTGATGA
AAGACTTGAACCTGGAGACTCTCTATAGAAACGCGTTATTGTAATGATGT
TTTATCGATAATCTTTAGGTACGAATTGGTGCGAAAGGATTGTTTGGGCA
CTCCGTAATGATATCAAATTGAACATTCAACATGCACCCCCTGTATCAGT
TTTCGAGTAAGTGaattttagagtccacaaagccttaaaatgttcttaac
ttgttcttaagattttggccatcgaagccttatgttcttctaTACTTATT
TGTTTtcgatggtttgagacagattcaaatgTAGCCCAATCGGCGACGCA
TCGCTATGTCTTGTCTCCGGTGGagaaaataccctacaatttccgcccta
ctggaaaattaaaatttttatttaggttttttattcgttttttttttcgt
cgtggggaaatttcgtcacctagaggcattttcgtcactttatTATCTAT
TATAAGATTTTGAAgcagatttagaaaaattttccgaaaaaataatttta
gatacgccatctaccgcaaaaattttttcaaaatgttttttctccgccga
aactaagctcttcagtcttcattttcttcttcatcaaattttttcattgc
gattcttaaattttcagactcaaggataattggcctaacagttttgtggg
ctacatcaagtagaactttacattttgtaagtggcaaatataaaaaattc
actatggtcagagccctgtTTTCACTTCACTTCACTTCGGCTACCCGAAG
TGAAACAGTACGTGTTACCACCCCCTAACTTAGCTTGTTGTGTTTGTTAG
GCAAAAGAACTCGTTTGAAAAGAAAGTGATTTTATTTGTTCTGTTAAGAA
ACATCGCTGGAAACGTATACAATGGAAAACTACGATAGAAATCCTTTTTT
tctgttgaaataaaaaaaaatttggtcgGGGATTAAAAAaccgggtaaaa
gttttgggcGGGGGGAAAAAtcaggtaaaagttttggttggggataaaaa
aaatcgggtaaaactTTTGGTCGGGTgttaaaatatcaaagaaataattc
gtcgggggaaaatttcgtcaccccttcaaaattttcgtcactttccccag
ACATTTCTCCCCCGATAAGGTACGCAAAGTTCCTAGCCTCCCGCTAAAAA
CCCTAGATTATACCACCAGGAGGTAGGAACCAAAAactgagaacaataga
attcccaaTCCCTTTTTGGATTTCAATAGATAGGGGCTGTGAGACACGGG
TGGTGTAAAGTGAAAAGAACAAAATGTTTGAAACAGGTGCTGCAAAAACC
AAATACatgtattttcttttataagcataacgtttataagcatacgcagg
ctcagttttcggcacctaaacaatggctctattgttttagaacaatagaa
tgctaagcataatgcgagcctgatataggggcagacacttgcttataaaa
aaaaaacatgtacacaaATGGTAACGAAAGGATATGTTCTACATAGTTGC
TATTGTTGCCACCCTCTCATTCGATGTTCAAGGGgtcaagaattttcttc
aaatcagagaaatatttgaattagagagtACTTTCCACCAGAGGGAACCA
ATGGTTTAGTTCCTATTAcagataaattaaaattaaaaaggttCGAATTA
AAACAACAATAGGAAAATATTAGATAGAGAGTTGCCCTGGGTTCAGGAAA
ATTTCGTAATCGAAACTTTCCAGAAGTTTCCCATACATCAAGCACTGTCA
TATCAAAGGATTATCATCTTTCAATATCACAGCATTGTTATGGGTATAGG
AGATTTTGATAGTGACAACAACAAAGCTCACGATGAGATTTTTTCGTCCA
TGAAACGACCACGTGTTATCAAAATGCATCTTACATATGAATTATTACCA
AGACAGTTTCAACAAAAGCAACCTAAGGTATTTATACTCTTTCTCACCTG
CAAACATCAATAGAATCTGATAGAGTCATTTATAAGTAAGGCTAAAATAA
GGCGATGTTGGAAATTTTCATACTTGACAAAATATAACAAACAAAATAGA
TCAACAGACGATATTGGcttcacatgaaaactcagatgaCCCACCCAATT
TCTCCACGATGCTTTGTGTGGAAAAAATTTCAtcgtgaacttttttccgc
gcaaagcattgtgggtaattttcgggggtcaaatctgagttagTTTCAcc
ttaagccgatatcgtctacaTTACATACTAGGCCAGTCAATCCCAAGGTG
CATCATGTTTCGTCGGAAATCAAGAATTTCCATAGAGAACGGGacttacc
gtgaaaagcacaggccgatatcatatattgacctgtgccgaccaatcgag
attcAGCACGCAATcaaaatgaatctatgtttgcTTTTTCATTTCtgtca
tttgttttccttttttctgcagagacAGCTTTTCCCATAAATTATGctcg
cgcatcgaaattatcaaaatgcgcgcgaaagtactactaagtaatacgcc
gaaaactggccaatcaggccgaacccgcattgcagggaaaaatttCCCTG
CAGgtgagttacctgcgccaagcgttaaacaagcagcaaaaatatcataa
actagactgtgaacaaagtttaacgcttggattcccaggctaacttAACC
TGTGATAATCAGGGTAAACGGGACTGTTTACATACAAGTCAGATTACAGA
AACCCAAATATTCGACGCAAATCATCGGGAAATATCTTTCTTTATATCAC
CAATTAGATGATTTACATGCTTCGAAACCCAAGAGATGTTTGCCAGTCCC
TTCACAGTCACTTCTATACACTCTACGATGACTTTTCTGAATCATTACAA
GATGTTGTTAATCTCATGACCGATGATGCTGGATTCTATTCTGGTCCGTT
TTTTAAACATGTTTTGGGATACTGGAAACGACGTTCttatgaaaatatat
ttatcattttttacgaagaaatgaaaaaagatttatccggTCATATTAAG
AAGATTGCTGATTTCTTAGACATTGAAATTTTAGATGAAGAAGTGTCAAA
ACTGGCAAACATTTTTCCTTTGATTCGATGAAACGAAAAGCAGAGCAAAT
GATTCCCTTTCATGCAAAGCAGGTCAGTGTGGAAcgattttttaaaatct
ttgctcAAATTTCAGATGGAAAAACAATTTAGCACAATCGAATCCTAATC
TAATCAGTATAATAAGGCGAAGTGGAGTACTCTTAGGGTGTTTATTTGGA
ACCAAAGAGTAGATATCCATAATCGTTTCAATGCAGGAGGTAAGGTTTCG
ATTCCCCTTAATCTTTAAATTAATTGAATACCCCTTAATCCTATTTATGC
CGACATTTCTCCACTTTCATAATACCAGGGGGTATTTTACACCACCctga
ataacttttgatctaattgaaatttttatacTAAATTTGGAACAGATGTT
GCTTATCATGGAAAgattaaaagattttgttaaagTCAGATAGTTTTGTG
tgctttgaaaaatgtaaaagagtGCAGGGATGGTGTGGTGTAAAATAcac
cctgataaaaatagggtgtATTTTACACGTCAATACGTCATGTGTCAATT
TGAGGAGAAATAGGTATGACAACTCGGATACCGAAGAAGGGAGGAGACCT
CGATATTTTTCAGGTTCACCCTtgtactaaagtctattcacgataagtgt
gcactcttttttcttttacctataactttcgaaggaattcttcaatcttt
atagatttggtatcattggaaagatattagtgagtggaacaaattgaaat
aaaaatatctttaaaaaaattataaaaatgaagatgaaaatgaagaagaa
aaaaatgaagatcttgtagaaaagtgctataactatcattttcactgaat
tgAAACCTTggttatcgaacgtcatcactgtgaaaaaatttctcaaaaat
aatcattcagtcaaaagatatcaaacaaagttataagctaattgacgtct
aaaaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaat
caaagaatctctccagtgaaaatgatagttatagcacttttctacaagat
cttcatttttttcttcttcattttcatcttcatttttagaattattttaa
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNtctctccaacgataccaaatgtataa
agattgaagaattccttcaaaagttataggtaaaagaaaaaagagtgcac
acttatcgtgaatagactttaaatcaCTTTCTTTTTACAAATTGGACGAT
TTTCCAGGAAGGTCATAGTTCAACAGTCGAAGCAGCTCACAAAGGAAAGA
CAATGTTTAACAAGGGACAAGCTGGATCGTGGAAGGTTCTATTTACACCA
GCGATGACAAAACAAATGGAAGAATGGGAATCAAAATGGTTGAGAGATAC
TGATCTTGAACTTATTTATGAATAGTACTGGAGTATCGAAACATGTAAAA
TAAGAGttagataaaattttgaaacgaGTAAAATGaaacatacacgcttt
tttttacaagaatagtgtactttgaatgagggtcaagtattcttaagaaa
ttggcaaaattgagggtgaaatcttcttaacgtattcttgacttttttac
aaacatgagaaaatcaatttgagggtttggacttttgagtgaacatttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042180-exon-sc0003263-1491911889:4132..4356 | TCONS_00042180-exon-sc0003263-1491911889:4132..4356 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1510915933:4132..4356 | TCONS_00042180-exon-sc0003263-1510915933:4132..4356 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1575043694:4132..4356 | TCONS_00042180-exon-sc0003263-1575043694:4132..4356 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1491911889:5150..5237 | TCONS_00042180-exon-sc0003263-1491911889:5150..5237 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1510915933:5150..5237 | TCONS_00042180-exon-sc0003263-1510915933:5150..5237 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1575043694:5150..5237 | TCONS_00042180-exon-sc0003263-1575043694:5150..5237 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1491911889:6864..7008 | TCONS_00042180-exon-sc0003263-1491911889:6864..7008 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1510915933:6864..7008 | TCONS_00042180-exon-sc0003263-1510915933:6864..7008 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1575043694:6864..7008 | TCONS_00042180-exon-sc0003263-1575043694:6864..7008 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1491911889:9789..10180 | TCONS_00042180-exon-sc0003263-1491911889:9789..10180 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1510915933:9789..10180 | TCONS_00042180-exon-sc0003263-1510915933:9789..10180 | Clytia hemisphaerica | exon |
| TCONS_00042180-exon-sc0003263-1575043694:9789..10180 | TCONS_00042180-exon-sc0003263-1575043694:9789..10180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003263 | supercontig | sc0003263:4132..10180 + |
Blast
The following BLAST results are available for this feature:
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