TCONS_00042179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042179
Unique NameTCONS_00042179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042179 ID=TCONS_00042179|Name=TCONS_00042179|organism=Clytia hemisphaerica|type=transcript|length=311bp
CCTTAGTTATATCCGATCAAGTCTCTTGCTATTGTTTTCCGAATACACGT
TTATCTATAGGGTTTCCGCATATTTACAGAACTAGAACAATCAATTTGCC
GAGTCAACATAATTACGCAGTGCGCATGTAATATATGCGCATGTCTCCTC
TAACgaaaatttccaactttttaATTACGCCATTATAATTATGGAAAGGA
AGCTAATAATGTATAGAGGACATGCATTCTTTTTAAtgaccttcaatttt
tttcttctgaacatcttatttctaagaaaaaacttaaaacaaaacctttc
tTTGATGGGTG
Run BLAST on NCBI

transcript from alignment at sc0003262:10111..10421

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042179 ID=TCONS_00042179|Name=TCONS_00042179|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at sc0003262:10111..10421 (Clytia hemisphaerica)
CACCCATCAAagaaaggttttgttttaagttttttcttagaaataagatg
ttcagaagaaaaaaattgaaggtcaTTAAAAAGAATGCATGTCCTCTATA
CATTATTAGCTTCCTTTCCATAATTATAATGGCGTAATtaaaaagttgga
aattttcGTTAGAGGAGACATGCGCATATATTACATGCGCACTGCGTAAT
TATGTTGACTCGGCAAATTGATTGTTCTAGTTCTGTAAATATGCGGAAAC
CCTATAGATAAACGTGTATTCGGAAAACAATAGCAAGAGACTTGATCGGA
TATAACTAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026047XLOC_026047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042179-exon-sc0003262-1491911889:10111..10421TCONS_00042179-exon-sc0003262-1491911889:10111..10421Clytia hemisphaericaexon
TCONS_00042179-exon-sc0003262-1510915933:10111..10421TCONS_00042179-exon-sc0003262-1510915933:10111..10421Clytia hemisphaericaexon
TCONS_00042179-exon-sc0003262-1575043694:10111..10421TCONS_00042179-exon-sc0003262-1575043694:10111..10421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003262supercontigsc0003262:10111..10421 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.40663	0	0	0	0.29299	0.362915	1.05676	1.15779	0	0.240141	0	0	0	0	0	0	0	0	0	0	1.49319	1.66579	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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