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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042178 ID=TCONS_00042178|Name=TCONS_00042178|organism=Clytia hemisphaerica|type=transcript|length=1269bp
GTAATCTTTACAAACGTAATTTTGGTTACAAGTGGAGTAGATTCGCCAAT
TCAACAATGAAACACCAGCAAAATCATTATGTCTCCTTATTGGTGATTTT
TTACATCTTATGTTTTCGGACAAATTTGTGTGTTGCGCGAGAAAGAAGTT
TTATTTCTCCTAAAGACAGATTAAAAGATCCTATTCGAGTAATTCAATTT
GCAAATAAAACTGCGACACATATTGTCGCTGAGAACGGCAATGACGTAAC
ACTTGATTGTCGGGTTTCTGGAAATATGAATGCAACTCACTGGTGGTTTA
AAATCAATCCTGAAAATGGAAAGCATACATTTTTGTCATCATCATCCATT
TTAACGTTGAAGGATTTGCGATCGTCTGATTCTGGTCAATATACGTGCAT
TGTGAATGCGCAGTCAGCGAAAAATCAACGAAATTTCACTGTAAATGTAC
CATCATATCGCTATACAATCAAAATTCCACTCCTATTGAAACAACTCGGC
CCAAATCCGAACGTTAACAGTCAAACAAGTATTGATGTGGGGGAGCATGT
CAGGCTTCAATGTCACGAAGAATCATCTAAACAATCATATTATGGCTACA
GAGTCGAATTTCGCTGGATTCGTTGGAAAAAGAACTTTAACCCAACGATT
CTTCAAAATATTGGGCGTGACATTATGAAAAATAAACTCGACTTTACTAA
ATACCCCTTTGTTGAGGAGATCCCATCTTCAGAATACAAAGTGTTTATCC
ATATGCGATACGATAATAATGTTAGATTCGGCAGACTTCACAGCTCCGAT
CTTACCTTGTCTCAAGTTACGGAGGATGATCAGGGCTATTACTCATGTGT
CGCGAGTAATTcgtttggttttgattttttgacaaGATATGTTGCTGTCA
ACAAAGGTGCTGGGCTAATCTTTGGGATAAGCATCATATGTACCGTATGT
AGATTAATTAAACTTAGAGGTGATAAGCAGAGAGCTCTTCCAGTAGAAGA
AATTGGATTGGTTGAAATCCATCGAAATGATCAGCAAGGGGTTCGACACG
AAGAAAATGTCTATATAATAGACTCCTCTCCTGCTATTGTGCAGGCTAAA
AAGAGGAATCCTAAGAGAACGAATGAGGAATTGTACCACGACCCTCAAGG
TATTATCCATTGGTGCTTGACACATTTTTTCATATAAGCGACTCCAATTT
CGGGTCATTTTaactcattttctgaaaatttcactcTCTGATATTATATC
ATATTCATGCTTATTGGGC Run BLAST on NCBI transcript from alignment at sc0003262:10534..13032+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042178 ID=TCONS_00042178|Name=TCONS_00042178|organism=Clytia hemisphaerica|type=transcript|length=2499bp|location=Sequence derived from alignment at sc0003262:10534..13032+ (Clytia hemisphaerica)
GTAATCTTTACAAACGTAATTTTGGTTACAAGTGGAGTAGATTCGCCAAT
TCAACAATGAAACACCAGCAAAATCATTATGTCTCCTTATTGGTGATTTT
TTACATCTTATGTTTTCGGACAAATTTGTGTGTTGCGCGAGAAAGAAGTT
TTATTTCTCCTAAAGACAGATTAAAAGATCCTATTCGAGTAATTCAATTT
GCAAATAAAACTGCGACACATATTGTCGCTGAGAACGGCAATGACGTAAC
ACTTGATTGTCGGGTTTCTGGAAATATGAATGCAACTCACTGGTGGTTTA
AAATCAATCCTGAAAATGGAAAGCATACATTTTTGTCATCATCATCCATT
TTAACGTTGAAGGATTTGCGATCGTCTGATTCTGGTCAATATACGTGCAT
TGTGAATGCGCAGTCAGCGAAAAATCAACGAAATTTCACTGTAAATGGTA
AGTACTTACCTTACTTTAGCTCGTAAGACCAAAATGTTTGTTCAATTCGA
ACTTTGAGCTATCCGCATAGTTAACGTACGCAGCGAGGAGGGTAGTGAAG
AGGGAAATGGTCTATTTTTTTGAATGCCGTCATTTTTCAAAGTCAATTTA
ACAAAGATTATTTATgcattatttttgtttaaattagTACCATCATATCG
CTATACAATCAAAATTCCACTCCTATTGAAACAACTCGGCCCAAATCCGA
ACGTTAACAGTCAAACAAGTATTGATGTGGGGGAGCATGTCAGGCTTCAA
TGTCACGAAGAATCATCTAAACAATCATATTATGGCTACAGAGTCGAATT
TCGCTGGATTCGTTGGAAAAAGAACTTTAACCCAACGATTCTTCAAAATA
TTGGGCGTGACATTATGAAAAATAAACTCGACTTTACTAAATACCCCTTT
GTTGAGGAGATCCCATCTTCAGAATACAAAGTGTTTATCCATATGCGATA
CGATAATAATGTTAGATTCGGCAGACTTCACAGCTCCGATCTTACCTTGT
CTCAAGTTACGGAGGATGATCAGGGCTATTACTCATGTGTCGCGAGTAAT
TcgtttggttttgattttttgacaaGATATGTTGCTGTCAACAAAGGTGA
ATtagtttttcattaaaaatagtttttattaGTTGTCTTTcaatgatatt
catgatgtaatcttttttaCGGAAATGCCCTGTGTTTTTTCTGCGTAAAA
GATTACATCTTGAGAATATCATTGCTTTCAAAGttaatagcgctccgcaa
cacatacgtcataattattatttttcactttttttgacatttgtacgagt
tgcaatcccacaattcaatgcagttgaattaaagatacgtgcaagttgtt
agatatcttttgtcaaatggtGCAATTAACGTGtaaaagagattaacgca
aaggttgatgggattggaactcgtacaaacacatcgagagtaatgattat
gtcaaaaataaaatctatttttagattcagcgcggtgcgctataGGAATA
AACTTGTCGTGTATATCAAGAATGACACCCTATATTTACGGACCCTGCAT
TGATCTCACCGCGGCTTCtcatagcctgggaatccatgctatgatttctt
ctttgataaactgatggtgaaatgtatagcatggtgagagtttgaatttc
tcagatcctaataacggttgaaaacatagccaatcaaattttgttattct
tttactggtcacactttcttagagaaagcgcaacttccgaaatttggttt
ttattttagtaagtgaggacagcgctaaattcgaatttccaactgtaaat
tttttgagccAATCAGAGCGCGGAAAAAATatgagtccaatattggactc
acagctcgaacccgtcttgtgtacatcaaattataaaaaaacacatgacg
ggtctcctgtctaggcTTCTCACTGCTTCCATAAACGGTTGCAACATCCA
CACCATACATGCCCTTCCCACCATTATCATCCCATGCCCACTATTCTATC
GGACCTTAAAGTCATCTATATAGCCACTGCGTGTATGTTTTTCTAGTGAA
AATTAAAgattaatttttctatttttcagtacatgataTTGAATCTCCAA
GGATCAACATTCTGAAAGTTGTTCTGATCGCTTTAGGTGCTGGGCTAATC
TTTGGGATAAGCATCATATGTACCGTATGTAGATTAATTAAACTTAGAGG
TGATAAGCAGAGAGCTCTTCCAGTAGAAGAAATTGGATTGGTTGAAATCC
ATCGAAATGATCAGCAAGGGGTTCGACACGAAGAAAATGTCTATATAATA
GACTCCTCTCCTGCTATTGTGCAGGCTAAAAAGAGGAATCCTAAGAGAAC
GAATGAGGAATTGTACCACGACCCTCAAGGTATTATCCATTGGTGCTTGA
CACATTTTTTCATATAAGCGACTCCAATTTCGGGTCATTTTaactcattt
tctgaaaatttcactcTCTGATATTATATCATATTCATGCTTATTGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042178-exon-sc0003262-1491911889:10534..10980 | TCONS_00042178-exon-sc0003262-1491911889:10534..10980 | Clytia hemisphaerica | exon |
| TCONS_00042178-exon-sc0003262-1510915933:10534..10980 | TCONS_00042178-exon-sc0003262-1510915933:10534..10980 | Clytia hemisphaerica | exon |
| TCONS_00042178-exon-sc0003262-1575043694:10534..10980 | TCONS_00042178-exon-sc0003262-1575043694:10534..10980 | Clytia hemisphaerica | exon |
| TCONS_00042178-exon-sc0003262-1491911889:11171..11629 | TCONS_00042178-exon-sc0003262-1491911889:11171..11629 | Clytia hemisphaerica | exon |
| TCONS_00042178-exon-sc0003262-1510915933:11171..11629 | TCONS_00042178-exon-sc0003262-1510915933:11171..11629 | Clytia hemisphaerica | exon |
| TCONS_00042178-exon-sc0003262-1575043694:11171..11629 | TCONS_00042178-exon-sc0003262-1575043694:11171..11629 | Clytia hemisphaerica | exon |
| TCONS_00042178-exon-sc0003262-1491911889:12670..13032 | TCONS_00042178-exon-sc0003262-1491911889:12670..13032 | Clytia hemisphaerica | exon |
| TCONS_00042178-exon-sc0003262-1510915933:12670..13032 | TCONS_00042178-exon-sc0003262-1510915933:12670..13032 | Clytia hemisphaerica | exon |
| TCONS_00042178-exon-sc0003262-1575043694:12670..13032 | TCONS_00042178-exon-sc0003262-1575043694:12670..13032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003262 | supercontig | sc0003262:10534..13032 + |
Blast
The following BLAST results are available for this feature:
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