TCONS_00042167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042167
Unique NameTCONS_00042167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042167 ID=TCONS_00042167|Name=TCONS_00042167|organism=Clytia hemisphaerica|type=transcript|length=488bp
CGACACTTATGGTGAACAAAGAGGTTATGTAAAGCGTGAAGATTGCCGAA
AGTGTCCTGAGAATTCAGAAACTCGTTCAAAACCCAATGAACTGGCGTTG
TCTGTTGCAGATTGCGGCTACTGCAAGTTAGGATTTTCAGGAAATCCAGC
AATCGGTGTCAACTGTTCCGCTATTCCATGCGGTCCCTACCTAAAGATCA
AGAATGCCACTCCAATGAACGAAAGAATATGTTTGAATGCTGTTTTTGGT
CAGCAATGTGAATATAAGTGTGATCATGGTTATAAAATGATCAATCCGTC
AGAACACACTGTTAAGTGTATTGCAACAGAAATGAATGGAACACCCATTG
GTCACTGGAGTTCACCAATACCAGAATGTAAAATCATTGTTAAAAATGAA
TCCTGGTGGTCAACCATCTCATTCATTGGAGGTATCATTGGTGGAGTGGT
AGTGCTGATTTTTGTTCCTATcctgatttttgtttttt
Run BLAST on NCBI

protein sequence of TCONS_00042167-protein

>TCONS_00042167-protein ID=TCONS_00042167-protein|Name=TCONS_00042167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
DTYGEQRGYVKREDCRKCPENSETRSKPNELALSVADCGYCKLGFSGNPA
IGVNCSAIPCGPYLKIKNATPMNERICLNAVFGQQCEYKCDHGYKMINPS
EHTVKCIATEMNGTPIGHWSSPIPECKIIVKNESWWSTISFIGGIIGGVV
VLIFVPILIFVF
Run BLAST on NCBI

transcript from alignment at sc0003252:6471..8183-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042167 ID=TCONS_00042167|Name=TCONS_00042167|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at sc0003252:6471..8183- (Clytia hemisphaerica)
CGACACTTATGGTGAACAAAGAGGTTATGTAAAGCGTGAAGATTGCCGAA
AGTGTCCTGAGAATTCAGAAACTCGTTCAAAACCCAATGAACTGGCGTTG
TCTGTTGCAGATTGCGGCTACTGCAAGTTAGGATTTTCAGGAAATCCAGC
AATCGGTGTCAACTGTTCCGGTAAGCTATCATTTGAAAAATCCCCGTATT
TCCTTAGGTCATTAGCTGCCAAGTAGAATGTTTATCTTCTAACCAATTTC
AAAAGCTGAGAGTATTAGATAAAAGTTACCATCTAAAAATGCTATGGTTT
CCCAGCTGGCACACAACGTTGTTTCAACGTTTATCCAACGTTCACAACGT
CCATATAACGATAGATGAACGTTGAAACAACGTTGTGTGATTAAGTGGCT
GTATCACGATATATTTTTAAATTTTCAAAATCAACGATTATCGGAGAATG
GGCTCTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATATATTATTTT
TTTCATGATTTACCCCTGGACATTTTGATTTTTGACCCCCTGGACACGGG
TTATACCCCTGGACAAACATCAAATCAACCCCGTGGACACAAACAATTAC
CCCCGGACATTAAAATTTACCCCCTGGACATTGCAATTTTTTGGTATTTT
TTCAATACCCCAGGACAATTCATGCTCCAGCCCCCATGAACGGACTTTTT
CTGGAATAGCCCAATCCGCATATTTTAAAATAATCCGTATTCTAATCTTT
TACAACTAAAATTACAGCTATTCCATGCGGTCCCTACCTAAAGATCAAGA
ATGCCACTCCAATGAACGAAAGAATATGTTTGAATGCTGTTTTTGGTCAG
CAATGTGAATATAAGTGTGATCATGGTTATAAAATGATCAATCCGTCAGA
ACACACTGTTAAGTGTATTGCAACAGAAATGAATGGAACACCCATTGGTC
ACTGGAGTTCACCAATACCAGAATGTAAAATCATTGTTAAAAGTAAGCAT
TGACTAAAAGTTTGTTTCTATTTGTTTAGATTTTTTATGTGAATTCATTA
ACCTTTAACAATAGAACTTATCTTTATTTATACCATAACTACGCATGTGA
CATTTGGGCCAAGCTTCTACCCTAAAAACTCAAAACTTTTTTAAATTGAA
TTTAACTGAGCGTCCCGGGGTTATTGATATTGAGAAGAAGGTGTCAAATC
TTAGGCTTTTTACTTTAGAGACCAGCTTTTCTCCTCATATGTGATTCAGG
AAAATAAGGCTTTTTCCGAGAAATTATTAGAATGTGGTTAAAATTTGGTA
CGGAGCTTCCCAAAGGTTCCTAGCGAACCATTTTGTTTACATAGATAAAC
CAGCGGGCTCGAGTGGGTGGGTAGAGTTGACTTTCACTATAAGAAAAAAG
GCAACCCAAAACAAATGAACCTTGTAAATGATAGTTTAACAACCCTTAGA
GGTTAACTAACCCTTTTAGTCATAGAAAATTCTCTGTGCGCTGGTTTTCA
CCAAAAAAAGATCAGATTTGCTACCCAGAAAATGGCAAAACGGCGCCTTA
TACGTTCTCCGACTTCAACGATAGCTAATATACTGAACGTATTAAAATAC
AATTATTTGCAATTATTTAGATGAATCCTGGTGGTCAACCATCTCATTCA
TTGGAGGTATCATTGGTGGAGTGGTAGTGCTGATTTTTGTTCCTATCCTG
ATTTTTGTTTTTT

Coding sequence (CDS) from alignment at sc0003252:6471..8183-

>TCONS_00042167 ID=TCONS_00042167|Name=TCONS_00042167|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0003252:6471..8183- (Clytia hemisphaerica)
ATGAATCCTGGTGGTCAACCATCTCATTCATTGGAGGTATCATTGGTGGA
GTGGTAGTGCTGATTTTTGTTCCTATCCTGATTTTTGTTTTTCTATTCCA
TGCGGTCCCTACCTAAAGATCAAGAATGCCACTCCAATGAACGAAAGAAT
ATGTTTGAATGCTGTTTTTGGTCAGCAATGTGAATATAAGTGTGATCATG
GTTATAAAATGATCAATCCGTCAGAACACACTGTTAAGTGTATTGCAACA
GAAATGAATGGAACACCCATTGGTCACTGGAGTTCACCAATACCAGAATG
TAAAATCATTGTTAAAAGACACTTATGGTGAACAAAGAGGTTATGTAAAG
CGTGAAGATTGCCGAAAGTGTCCTGAGAATTCAGAAACTCGTTCAAAACC
CAATGAACTGGCGTTGTCTGTTGCAGATTGCGGCTACTGCAAGTTAGGAT
TTTCAGGAAATCCAGCAATCGGTGTCAACTGTTCCGATGAATCCTGGTGG
TCAACCATCTCATTCATTGGAGGTATCATTGGTGGAGTGGTAGTGCTGAT
TTTTGTTCCTATCCTGATTTTTGTTTTTCTATTCCATGCGGTCCCTACCT
AAAGATCAAGAATGCCACTCCAATGAACGAAAGAATATGTTTGAATGCTG
TTTTTGGTCAGCAATGTGAATATAAGTGTGATCATGGTTATAAAATGATC
AATCCGTCAGAACACACTGTTAAGTGTATTGCAACAGAAATGAATGGAAC
ACCCATTGGTCACTGGAGTTCACCAATACCAGAATGTAAAATCATTGTTA
AAAGACACTTATGGTGAACAAAGAGGTTATGTAAAGCGTGAAGATTGCCG
AAAGTGTCCTGAGAATTCAGAAACTCGTTCAAAACCCAATGAACTGGCGT
TGTCTGTTGCAGATTGCGGCTACTGCAAGTTAGGATTTTCAGGAAATCCA
GCAATCGGTGTCAACTGTTCCGATGAATCCTGGTGGTCAACCATCTCATT
CATTGGAGGTATCATTGGTGGAGTGGTAGTGCTGATTTTTGTTCCTATCC
TGATTTTTGTTTTTCTATTCCATGCGGTCCCTACCTAAAGATCAAGAATG
CCACTCCAATGAACGAAAGAATATGTTTGAATGCTGTTTTTGGTCAGCAA
TGTGAATATAAGTGTGATCATGGTTATAAAATGATCAATCCGTCAGAACA
CACTGTTAAGTGTATTGCAACAGAAATGAATGGAACACCCATTGGTCACT
GGAGTTCACCAATACCAGAATGTAAAATCATTGTTAAAAGACACTTATGG
TGAACAAAGAGGTTATGTAAAGCGTGAAGATTGCCGAAAGTGTCCTGAGA
ATTCAGAAACTCGTTCAAAACCCAATGAACTGGCGTTGTCTGTTGCAGAT
TGCGGCTACTGCAAGTTAGGATTTTCAGGAAATCCAGCAATCGGTGTCAA
CTGTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026037XLOC_026037Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042167-proteinTCONS_00042167-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042167-exon-sc0003252-1575043694:8014..8183TCONS_00042167-exon-sc0003252-1575043694:8014..8183Clytia hemisphaericaexon
TCONS_00042167-exon-sc0003252-1575043694:7192..7416TCONS_00042167-exon-sc0003252-1575043694:7192..7416Clytia hemisphaericaexon
TCONS_00042167-exon-sc0003252-1575043694:6471..6563TCONS_00042167-exon-sc0003252-1575043694:6471..6563Clytia hemisphaericaexon
TCONS_00042167-exon-sc0003252-1510915933:8014..8183TCONS_00042167-exon-sc0003252-1510915933:8014..8183Clytia hemisphaericaexon
TCONS_00042167-exon-sc0003252-1510915933:7192..7416TCONS_00042167-exon-sc0003252-1510915933:7192..7416Clytia hemisphaericaexon
TCONS_00042167-exon-sc0003252-1510915933:6471..6563TCONS_00042167-exon-sc0003252-1510915933:6471..6563Clytia hemisphaericaexon
TCONS_00042167-exon-sc0003252-1491911889:8014..8183TCONS_00042167-exon-sc0003252-1491911889:8014..8183Clytia hemisphaericaexon
TCONS_00042167-exon-sc0003252-1491911889:7192..7416TCONS_00042167-exon-sc0003252-1491911889:7192..7416Clytia hemisphaericaexon
TCONS_00042167-exon-sc0003252-1491911889:6471..6563TCONS_00042167-exon-sc0003252-1491911889:6471..6563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003252supercontigsc0003252:6471..8183 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.326969	0.153052	0	0	0	0	0.0845704	0.263481	0	0	0	0	0	0	0	0	0	0	0.546106	0.609233	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000436Sushi_SCR_CCP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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