TCONS_00042163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042163
Unique NameTCONS_00042163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042163 ID=TCONS_00042163|Name=TCONS_00042163|organism=Clytia hemisphaerica|type=transcript|length=619bp
GAAAAATTTCGTCTCTGGTGGAAAAATTACCCTCTAGcttcttcaaaaag
tttccctCGCAGAGCGAGACCATAGAGgcaacaaaattaaacaaacttgA
GACATCACCTGGTTTATTGagacagagatgtgaaataCTACTGTTGACTT
CTGATTCTCCATTGTTAAGTTCTGCAACTCCGTCGTTGAGTTCTGTTACT
TCATCAATCAGTTCTGCTTTTCCACCATTCGGCTCTGCTTCTCCATTGTT
CAGTTCTGCTTCTCCAATGTTCAGTTCTGATTTTCCATTGATAAGTTCTG
TTTTTCCATCAATGAGTTCTGTTATTACAGTGATCAGTTCTGCTTCTCCA
TCGTTCAGTTCTGCTTTTCCACTGTTGAATTCTAATTCTCCATCGTTAAG
TTCTGCCACTCCGTCGTTAAGTTCTGTTTCTTCATCAATCAGTTCTGCTT
TTCCACCATTCAGGTCTGCTTCTTCATTGTTCAGTTCTGCTTCTCCATCG
AGAAGTTCTGTTTTTACATGGATGAGTTCTGTTTTTACATTGACGAGTTC
TGCTTTTACATCGATCAGTTCTGCTTCTCCATCGTTCAGTTCTGCTTTTC
CACTGTTGAATTCTAATTC
Run BLAST on NCBI

protein sequence of TCONS_00042163-protein

>TCONS_00042163-protein ID=TCONS_00042163-protein|Name=TCONS_00042163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
ELEFNSGKAELNDGEAELIDVKAELVNVKTELIHVKTELLDGEAELNNEE
ADLNGGKAELIDEETELNDGVAELNDGELEFNSGKAELNDGEAELITVIT
ELIDGKTELINGKSELNIGEAELNNGEAEPNGGKAELIDEVTELNDGVAE
LNNGESEVNSSISHLCLNKPGDVSSLFNFVASMVSLCEGNFLKKLEGNFS
TRDEIF
Run BLAST on NCBI

transcript from alignment at sc0003249:1..619

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042163 ID=TCONS_00042163|Name=TCONS_00042163|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at sc0003249:1..619 (Clytia hemisphaerica)
GAATTAGAATTCAACAGTGGAAAAGCAGAACTGAACGATGGAGAAGCAGA
ACTGATCGATGTAAAAGCAGAACTCGTCAATGTAAAAACAGAACTCATCC
ATGTAAAAACAGAACTTCTCGATGGAGAAGCAGAACTGAACAATGAAGAA
GCAGACCTGAATGGTGGAAAAGCAGAACTGATTGATGAAGAAACAGAACT
TAACGACGGAGTGGCAGAACTTAACGATGGAGAATTAGAATTCAACAGTG
GAAAAGCAGAACTGAACGATGGAGAAGCAGAACTGATCACTGTAATAACA
GAACTCATTGATGGAAAAACAGAACTTATCAATGGAAAATCAGAACTGAA
CATTGGAGAAGCAGAACTGAACAATGGAGAAGCAGAGCCGAATGGTGGAA
AAGCAGAACTGATTGATGAAGTAACAGAACTCAACGACGGAGTTGCAGAA
CTTAACAATGGAGAATCAGAAGTCAACAGTAGtatttcacatctctgtct
CAATAAACCAGGTGATGTCTcaagtttgtttaattttgttgcCTCTATGG
TCTCGCTCTGCGagggaaactttttgaagaagCTAGAGGGTAATTTTTCC
ACCAGAGACGAAATTTTTC

Coding sequence (CDS) from alignment at sc0003249:1..619

>TCONS_00042163 ID=TCONS_00042163|Name=TCONS_00042163|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0003249:1..619 (Clytia hemisphaerica)
GAATTAGAATTCAACAGTGGAAAAGCAGAACTGAACGATGGAGAAGCAGA
ACTGATCGATGTAAAAGCAGAACTCGTCAATGTAAAAACAGAACTCATCC
ATGTAAAAACAGAACTTCTCGATGGAGAAGCAGAACTGAACAATGAAGAA
GCAGACCTGAATGGTGGAAAAGCAGAACTGATTGATGAAGAAACAGAACT
TAACGACGGAGTGGCAGAACTTAACGATGGAGAATTAGAATTCAACAGTG
GAAAAGCAGAACTGAACGATGGAGAAGCAGAACTGATCACTGTAATAACA
GAACTCATTGATGGAAAAACAGAACTTATCAATGGAAAATCAGAACTGAA
CATTGGAGAAGCAGAACTGAACAATGGAGAAGCAGAGCCGAATGGTGGAA
AAGCAGAACTGATTGATGAAGTAACAGAACTCAACGACGGAGTTGCAGAA
CTTAACAATGGAGAATCAGAAGTCAACAGTAGtatttcacatctctgtct
CAATAAACCAGGTGATGTCTcaagtttgtttaattttgttgcCTCTATGG
TCTCGCTCTGCGagggaaactttttgaagaagCTAGAGGGTAATTTTTCC
ACCAGAGACGAAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026033XLOC_026033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042163-exon-sc0003249-1491911889:1..619TCONS_00042163-exon-sc0003249-1491911889:1..619Clytia hemisphaericaexon
TCONS_00042163-exon-sc0003249-1510915933:1..619TCONS_00042163-exon-sc0003249-1510915933:1..619Clytia hemisphaericaexon
TCONS_00042163-exon-sc0003249-1575043694:1..619TCONS_00042163-exon-sc0003249-1575043694:1..619Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042163-proteinTCONS_00042163-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003249supercontigsc0003249:1..619 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63626	1.87669	0.913422	1.37005	3.72382	2.37204	5.4747	4.47728	2.88479	4.00245	3.25197	2.0478	1.78927	3.09624	2.84225	7.17938	4.72512	6.58636	3.60087	3.72055	6.36554	6.99129	1.66207	2.69012	0	0	6.31403	5.02201	8.22877	8.28721
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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