TCONS_00042161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042161
Unique NameTCONS_00042161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042161 ID=TCONS_00042161|Name=TCONS_00042161|organism=Clytia hemisphaerica|type=transcript|length=721bp
atcgggaaatcggggaaaccggttcaccacgtggataaaaaacgtacgaa
atgaaacctgacagaaggttttcaaccagatttattcagataaagctata
ataggttcattacttgtggattttaaaacctacataatcaaaacgaaagt
tgttgggaaggaaagagtaaacgcaagcgTATTCGACGTGCTCTCTACAG
CAAGATCCGAGTATCTGAGCAGATCTTCAACAATGGCGATCGAGTGTTCT
ACATGCGTGAAGGTTCAAAGAAATGGCTTGGCCCAGCCAaagtggtgttt
caagatggcaaAGTGATATTTATTCGTCACGGAGGAATAATGGTTCGTGT
TTCTCCAAATCGTCTCATAAAAGCACCAGAGNTCATGCTGGAAGATGTGA
AGAAGAAACATTCAACTATGTTGGTTTTCACCTGACTCAAACATCAGATG
GCATCACTATCTCCCAAAATGATTATGTTCAAAGTTTACCAGATGTTGAA
ATATCACCAGAACGAATGTCTCAAAAATGTGAAAAGTTAACTCCTGAAGA
AACAACAACATTCAGAGCTTCAGTTGGCAAACTTAATTGGGCTGTTCAAG
GATCAAAACCAGATTTCGCCTTCCACGTTGTCTATTTCAGTACAAAATTT
AATGATGCAACAGTCAACGATCTAATACAACTAAAGAAATGTATCAGAAA
ACTGAAAGAGAGTTCCTGTNN
Run BLAST on NCBI

protein sequence of TCONS_00042161-protein

>TCONS_00042161-protein ID=TCONS_00042161-protein|Name=TCONS_00042161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MAWPSQSGVSRWQSDIYSSRRNNGSCFSKSSHKSTRXHAGRCEEETFNYV
GFHLTQTSDGITISQNDYVQSLPDVEISPERMSQKCEKLTPEETTTFRAS
VGKLNWAVQGSKPDFAFHVVYFSTKFNDATVNDLIQLKKCIRKLKESSC
Run BLAST on NCBI

transcript from alignment at sc0003247:9038..9758

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042161 ID=TCONS_00042161|Name=TCONS_00042161|organism=Clytia hemisphaerica|type=transcript|length=721bp|location=Sequence derived from alignment at sc0003247:9038..9758 (Clytia hemisphaerica)
NNACAGGAACTCTCTTTCAGTTTTCTGATACATTTCTTTAGTTGTATTAG
ATCGTTGACTGTTGCATCATTAAATTTTGTACTGAAATAGACAACGTGGA
AGGCGAAATCTGGTTTTGATCCTTGAACAGCCCAATTAAGTTTGCCAACT
GAAGCTCTGAATGTTGTTGTTTCTTCAGGAGTTAACTTTTCACATTTTTG
AGACATTCGTTCTGGTGATATTTCAACATCTGGTAAACTTTGAACATAAT
CATTTTGGGAGATAGTGATGCCATCTGATGTTTGAGTCAGGTGAAAACCA
ACATAGTTGAATGTTTCTTCTTCACATCTTCCAGCATGANCTCTGGTGCT
TTTATGAGACGATTTGGAGAAACACGAACCATTATTCCTCCGTGACGAAT
AAATATCACTttgccatcttgaaacaccacttTGGCTGGGCCAAGCCATT
TCTTTGAACCTTCACGCATGTAGAACACTCGATCGCCATTGTTGAAGATC
TGCTCAGATACTCGGATCTTGCTGTAGAGAGCACGTCGAATAcgcttgcg
tttactctttccttcccaacaactttcgttttgattatgtaggttttaaa
atccacaagtaatgaacctattatagctttatctgaataaatctggttga
aaaccttctgtcaggtttcatttcgtacgttttttatccacgtggtgaac
cggtttccccgatttcccgat

Coding sequence (CDS) from alignment at sc0003247:9038..9758

>TCONS_00042161 ID=TCONS_00042161|Name=TCONS_00042161|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0003247:9038..9758 (Clytia hemisphaerica)
ACAGGAACTCTCTTTCAGTTTTCTGATACATTTCTTTAGTTGTATTAGAT
CGTTGACTGTTGCATCATTAAATTTTGTACTGAAATAGACAACGTGGAAG
GCGAAATCTGGTTTTGATCCTTGAACAGCCCAATTAAGTTTGCCAACTGA
AGCTCTGAATGTTGTTGTTTCTTCAGGAGTTAACTTTTCACATTTTTGAG
ACATTCGTTCTGGTGATATTTCAACATCTGGTAAACTTTGAACATAATCA
TTTTGGGAGATAGTGATGCCATCTGATGTTTGAGTCAGGTGAAAACCAAC
ATAGTTGAATGTTTCTTCTTCACATCTTCCAGCATGANCTCTGGTGCTTT
TATGAGACGATTTGGAGAAACACGAACCATTATTCCTCCGTGACGAATAA
ATATCACTttgccatcttgaaacaccacttTGGCTGGGCCAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026031XLOC_026031Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042161-proteinTCONS_00042161-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042161-exon-sc0003247-1491911889:9038..9758TCONS_00042161-exon-sc0003247-1491911889:9038..9758Clytia hemisphaericaexon
TCONS_00042161-exon-sc0003247-1510915933:9038..9758TCONS_00042161-exon-sc0003247-1510915933:9038..9758Clytia hemisphaericaexon
TCONS_00042161-exon-sc0003247-1575043694:9038..9758TCONS_00042161-exon-sc0003247-1575043694:9038..9758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003247supercontigsc0003247:9038..9758 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.58216	2.98352	4.10344	4.41692	5.41644	3.08241	3.93308	3.78436	1.971	2.6962	3.93585	3.67432	2.62295	2.19497	1.41376	2.90856	2.06852	2.33377	1.72377	3.31933	4.97976	5.20544	1.00708	1.53917	2.77942	3.51209	5.57419	5.28472	2.27623	1.51538
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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