TCONS_00042158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042158
Unique NameTCONS_00042158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042158 ID=TCONS_00042158|Name=TCONS_00042158|organism=Clytia hemisphaerica|type=transcript|length=324bp
tcagctaTTACAAAGGCATTACAAAAAGCTCCAAGAACTTCTACagATTG
TGTTCGATTTCTTCCACGGAGATGGGAATGGCTTATCTGTGGAGGCTTTA
CAAGGAGCTCTGCATCAGgAACTGACGTATTGTTTACAGTTGAATAGCTC
ATCCACAGAAGAACTGATCGAAAACTATTTTGTTGACCAATGTGAACAAC
AGAAAGCCGCTGATTCCAGTTTGGGGAAGACTGCTTTCAAAGTTTTCTTT
GATAATTTAACAAAGAAATTGAATGTCTATGTATTAAATGCAGCAAATAT
TCTTCCGCTGGATAGCTCAGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00042158-protein

>TCONS_00042158-protein ID=TCONS_00042158-protein|Name=TCONS_00042158-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
QLLQRHYKKLQELLQIVFDFFHGDGNGLSVEALQGALHQELTYCLQLNSS
STEELIENYFVDQCEQQKAADSSLGKTAFKVFFDNLTKKLNVYVLNAANI
LPLDSSG
Run BLAST on NCBI

transcript from alignment at sc0003246:334..3171-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042158 ID=TCONS_00042158|Name=TCONS_00042158|organism=Clytia hemisphaerica|type=transcript|length=2838bp|location=Sequence derived from alignment at sc0003246:334..3171- (Clytia hemisphaerica)
TCAGCTATTACAAAGGCATTACAAAAAGCTCCAAGAACTTCTACAGGTAA
AATAATTTTTTTCGTCGGTTTTGAACTATTAAGTGCAGCATACGACGTCG
TTCAATTTTTCTTCCCTATACTAGTACAATCATGGACAAAAGGTTGTAGA
CAAATGAAATTTCAGTGAAAAATCATGAGAAATAAAGCAAAATGACTCTT
CAATGTGTCTGAAAGGGGAGGGAAGTTAAGAAAAACACTTTTGAAGTGCT
TTCGAAATCAAAGAATAGTTGAAAATTTTAAGTTCCAAAGTAATGGCAGG
CAATGGGTTTTTAATGATAACTGTCTTGTTTAAAAGTTATTTCAGCTTTA
CCGTGTGTCTTTGAAGTCATTGATCGAAATTGAATGCGGAGAATTTTTCT
TAAAAAATGAAAGCAACAGATTATCTTTAGACGTACTAATTTCCGCGAAG
TCGAAAAATTGCAAAATTGCGAAATTTACTTTCGCGAATTTAACGCGAAT
TTGCTCGCGAAAGTTTGTACGCCTTAAGTATCTTAAAAATAAGGAGAAGC
ACTTTGGTAAAAAATGCGCCATCCTCAATGCTTTTATACGAGATATAAAT
AATATTTTTTTGCAATCACTAGACCTTTACAGGCACGACGGAAGATTTCT
ATATCTGGTACAGCGAATGAGAAAATTTAAGCGATTTTATAGCAATTTTA
CCGACGAAGAAGAGAATTTCGGGGCTTTTTGTGAAAATCTGGTACGGCGG
CTGCCATAACTGTCGTACCGGTTGCGTCGTGTCTGCTTTACTACCCATCT
CGTCCACACTATAATAAACAATTTCCTTTTACTCTAGATTGTGTTCGATT
TCTTCCACGGAGATGGGAATGGCTTATCTGTGGAGGCTTTACAAGGAGCT
CTGCATCAGGTAATCATTATTCTTCTGTTCCACTCGTATTTATATTTACA
CTTGATTTGGGCTGACTGGCTTCTCGTTGTCATACAACGGAGCCTCTTTA
ACTCGAACCTCTATAACTCGAATCTCTCAATAACTCGAACAACTTTTATG
ACCCCTTCAACAGTTAACAGTCCCTTATAAACCTTACTCCATAACTTGAA
ATTTCCTTAACTCGAACAGAATTTATGTTTCCCGTATCTGTTCGAATTAT
GGAGACTCGACTTTATAAATTTTAAAATTTAAATTGGCTCTGATTTCATT
GAGCACTCTGCAGCATCAATCACAAACAAATCGACGAGATGGAGTTTTTA
CAAGCTCTTATTTGATTTGGTTGGTCGTTAACCAGTAATAAAAATTTTTT
TTTACTTTTTCTAAAGAACGCGTCATTTTTATTACATCAAATGACCAATT
ATTATAGTATCTTATAAAAACTCCATCTCATCTGAAATCGACTCGACTGT
TTATAAATCCTTTAACAATTGTAACATGTTGTTTGAAAGAGTTTTTTTCC
CACATATTATACATACAGTTGAGTCTCCGAAAACGCACGGGGAAACAAAT
CTGTTCGAGTTAAGGAAATTTTGAGTTATAGAGTAAGGTTTATAAGACAT
TGTTAGCTGAAGGGACCAGAAAACTTGTTCGAGCTCAGGAGACATTCGAG
TTGTAGAGGTTCGAGTTGAAGAGACTCAACTGTAATATTGAAGTTGACCC
TCTACGCTGCTACTTATCCCTCACGATAAGATTAAGATAAATATTTTTGA
TATTTCTTTTCTTTAGGAACTGACGTATTGTTTACAGTTGAATAGCTCAT
CCACAGAAGAACTGATCGAAAACTATTTTGTTGACCAATGTGAACAACAG
GTTCGTTGAAAATTTTCACACTAGTTGTGAAGATGTTATCGAGTACACGT
TTTTTTATAAGAACGTACAAAATTTTTGACGCCTTTGGATGTTCTTAAAA
CTTTATGAGTTTAAGCCTTATAATGTTCTTAATATGTTCTTATTTTCCCC
ATTTTTGGAATGTTTTTGATTTCAAATTTGTTTGAGAACACTACTGGCAA
CCGTCCACAAATCTATAAAGCCCGAAGGGCTAGATGGCGTGCTTTGCCTT
TTTGGTAAGAAATCCCACTCAGGTCACGTGACATTACAATAGAATTTCAA
CGCTTGACTAATCAGAAGTTTCGCAGATTTTCAAAAACAAAAGCAACAAC
ATGTTTTGCGAAATTCACTTGTTTTTGCTTGGAAAAGCTTAAAGCACTCC
ATCTAGCCCTTCCGTCACCTTTCTATTCTAATAACCTAATTATTGTTTAA
ATTGAATTAGATTCTCAACATCTTAGCAACCTAACAATGACATCTCGACA
ATTTTTAGATACAGTTGGCGCTCTCTAATTCCATTTTTGAGGGGAATAGG
ATTTTCATCGAATAAGGGAGCGTGTCGTATAGCAGAACGTCGATTTAGAG
AGTGTCAATTGTAGCTTATTTGTCTTGTCTTTCCTCGACAGGAGTTGTGC
TTTTCTATCTTCCTGTCAACTCTGTTGTTTCTACGCTTCACTTTTATGGT
TTAGAAAGCCGCTGATTCCAGTTTGGGGAAGACTGCTTTCAAAGTTTTCT
TTGATAATTTAACAAAGAAATTGAATGTCTATGGTAAGAATTTCTATTGA
GAAGCCTGCAATTTTTCGAGCTGAAAAAGTTTTCTTATGAACATTTTCAA
TGCGTTCACAGTCCATCTTCTGAATCGACAAAACGTTGAAAAATAAGTTT
TTAAGAAAAATATGTGTTAATTCTATCTTCGGGTTCATTGTGATCACACT
GTAAGTCTTTTAACATTTGAAAATAATTTCTCATTTCTTTTCTAGTATTA
AATGCAGCAAATATTCTTCCGCTGGATAGCTCAGGTAA

Coding sequence (CDS) from alignment at sc0003246:334..3171-

>TCONS_00042158 ID=TCONS_00042158|Name=TCONS_00042158|organism=Clytia hemisphaerica|type=CDS|length=1605bp|location=Sequence derived from alignment at sc0003246:334..3171- (Clytia hemisphaerica)
TATTAAATGCAGCAAATATTCTTCCGCTGGATAGCTCAGGTAAAGCCGCT
GATTCCAGTTTGGGGAAGACTGCTTTCAAAGTTTTCTTTGATAATTTAAC
AAAGAAATTGAATGTCTATGGAACTGACGTATTGTTTACAGTTGAATAGC
TCATCCACAGAAGAACTGATCGAAAACTATTTTGTTGACCAATGTGAACA
ACAGATTGTGTTCGATTTCTTCCACGGAGATGGGAATGGCTTATCTGTGG
AGGCTTTACAAGGAGCTCTGCATCAGCAGCTATTACAAAGGCATTACAAA
AAGCTCCAAGAACTTCTACAGTATTAAATGCAGCAAATATTCTTCCGCTG
GATAGCTCAGGTAAAGCCGCTGATTCCAGTTTGGGGAAGACTGCTTTCAA
AGTTTTCTTTGATAATTTAACAAAGAAATTGAATGTCTATGGAACTGACG
TATTGTTTACAGTTGAATAGCTCATCCACAGAAGAACTGATCGAAAACTA
TTTTGTTGACCAATGTGAACAACAGATTGTGTTCGATTTCTTCCACGGAG
ATGGGAATGGCTTATCTGTGGAGGCTTTACAAGGAGCTCTGCATCAGCAG
CTATTACAAAGGCATTACAAAAAGCTCCAAGAACTTCTACAGTATTAAAT
GCAGCAAATATTCTTCCGCTGGATAGCTCAGGTAAAGCCGCTGATTCCAG
TTTGGGGAAGACTGCTTTCAAAGTTTTCTTTGATAATTTAACAAAGAAAT
TGAATGTCTATGGAACTGACGTATTGTTTACAGTTGAATAGCTCATCCAC
AGAAGAACTGATCGAAAACTATTTTGTTGACCAATGTGAACAACAGATTG
TGTTCGATTTCTTCCACGGAGATGGGAATGGCTTATCTGTGGAGGCTTTA
CAAGGAGCTCTGCATCAGCAGCTATTACAAAGGCATTACAAAAAGCTCCA
AGAACTTCTACAGTATTAAATGCAGCAAATATTCTTCCGCTGGATAGCTC
AGGTAAAGCCGCTGATTCCAGTTTGGGGAAGACTGCTTTCAAAGTTTTCT
TTGATAATTTAACAAAGAAATTGAATGTCTATGGAACTGACGTATTGTTT
ACAGTTGAATAGCTCATCCACAGAAGAACTGATCGAAAACTATTTTGTTG
ACCAATGTGAACAACAGATTGTGTTCGATTTCTTCCACGGAGATGGGAAT
GGCTTATCTGTGGAGGCTTTACAAGGAGCTCTGCATCAGCAGCTATTACA
AAGGCATTACAAAAAGCTCCAAGAACTTCTACAGTATTAAATGCAGCAAA
TATTCTTCCGCTGGATAGCTCAGGTAAAGCCGCTGATTCCAGTTTGGGGA
AGACTGCTTTCAAAGTTTTCTTTGATAATTTAACAAAGAAATTGAATGTC
TATGGAACTGACGTATTGTTTACAGTTGAATAGCTCATCCACAGAAGAAC
TGATCGAAAACTATTTTGTTGACCAATGTGAACAACAGATTGTGTTCGAT
TTCTTCCACGGAGATGGGAATGGCTTATCTGTGGAGGCTTTACAAGGAGC
TCTGCATCAGCAGCTATTACAAAGGCATTACAAAAAGCTCCAAGAACTTC
TACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026028XLOC_026028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042158-exon-sc0003246-1575043694:3126..3171TCONS_00042158-exon-sc0003246-1575043694:3126..3171Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1575043694:2263..2334TCONS_00042158-exon-sc0003246-1575043694:2263..2334Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1575043694:1372..1455TCONS_00042158-exon-sc0003246-1575043694:1372..1455Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1575043694:589..667TCONS_00042158-exon-sc0003246-1575043694:589..667Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1575043694:334..376TCONS_00042158-exon-sc0003246-1575043694:334..376Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1510915933:3126..3171TCONS_00042158-exon-sc0003246-1510915933:3126..3171Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1510915933:2263..2334TCONS_00042158-exon-sc0003246-1510915933:2263..2334Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1510915933:1372..1455TCONS_00042158-exon-sc0003246-1510915933:1372..1455Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1510915933:589..667TCONS_00042158-exon-sc0003246-1510915933:589..667Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1510915933:334..376TCONS_00042158-exon-sc0003246-1510915933:334..376Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1491911889:3126..3171TCONS_00042158-exon-sc0003246-1491911889:3126..3171Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1491911889:2263..2334TCONS_00042158-exon-sc0003246-1491911889:2263..2334Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1491911889:1372..1455TCONS_00042158-exon-sc0003246-1491911889:1372..1455Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1491911889:589..667TCONS_00042158-exon-sc0003246-1491911889:589..667Clytia hemisphaericaexon
TCONS_00042158-exon-sc0003246-1491911889:334..376TCONS_00042158-exon-sc0003246-1491911889:334..376Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042158-proteinTCONS_00042158-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003246supercontigsc0003246:334..3171 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.3818	19.6046	7.10335	6.73799	12.5095	6.17205	17.4539	21.1518	9.95023	15.0701	10.2457	10.5571	13.5723	10.1828	3.5305	6.10169	7.61173	5.13023	13.5527	9.68641	11.0657	9.51511	8.03633	13.3407	30.8585	25.8663	2.71203	2.47475	0.938785	2.04672
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019558Munc13_subgr_dom-2
IPR014772Munc13_dom-2
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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