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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042156 ID=TCONS_00042156|Name=TCONS_00042156|organism=Clytia hemisphaerica|type=transcript|length=1985bp
GGCCAAACTGTTTATTTAAATCACGTGATAAGTTTTTATTTCTCGCTCAT
GAGGACGACACATCGAAAATCCACACATTTTTGAATCGTCTTGTGGGAAG
GAAAGAAAGCTCGTCttattgtgaaaatttttatctcttttacTGGTTTA
CTGTTGGACACTGATTTTTGGACAACCCTCTATTTGACCTTACTGTTTAA
CTTGACTGGATTTGTTTTGGACATTGATTTTTGGAAAACCCTCAATTTAT
AATTTGATCTCACAACCGTTTTTAACTGAGCTGGATTCGTTTTTGGACAT
TGATTTTTGCATAAACCTATTGAATTTCATATCGTTTAACTGAACTGGAC
TTGATTTTGGACATTAATTTTTGGACAACCCTCAATCTGATATCTACTGT
GTAACTGGACTTGATTTGTTTTTGGACATTGACTTTTGGACAACCCTCTA
TTGTATTTGATCTTATCGTTTAAACGGACTTGATTTGTTGATTGTTTTGG
ACATACTCTATATTGGACAGCCCACATAATgctaattttgttattttaat
gacactgttttacattttataaaatgGATGACCACATCAAAGCACTTTCT
GACATATGTCGTCTTTGTCGTGGTGAAGTTATTCTTCAACCAGGCTATGT
TACTTCAAAAACAGTGCTAGAATGTAAAGATAAAATTGGGAAGCTGTTTT
GTTATGACATTTCTTCTAATGACTGGTTATCTGTTCACCCTCAGAAGATA
TGTGCCAAATGTGCTCGTAAATTGAAACGAGTTTCAAACCCTAAACCTCA
GGCAATTGCAGAATTTGAAATTCATTCAGAAGCTGATTGCGACGTTTGCT
CTAGTACATTGAGCCTTCACGATTTTAAAGTCTCCAATGAGAAATTGCTT
CCTTTGTCagacaaaatcttataatgtGCGAAGCAAAATGGATTTGTTTa
tggagaaaattttaaaacatttacaTTTTTGAGAATTAAGGACAGTGTTA
ATGCTCCAATTATTGACATGACATTGTACGTAACAAAAGACCTTTTATCT
GATGATTACAGATAGCATTTGATAAGATCCTGTCTCTAGATAATGTACCA
CAACTAAAATTAGTTGACAGAATAATAAATCGtggaaatgttgataaaat
tttCAACCAATTGGGATTGTTGTCTTTTTGTCCTGGCAACAGTGACCTTG
ATTATTTGATTTCCGCACGTAAAGAAGACAAATCAGCAGATCACGGAAAA
ACTGTTTTGGAAGACACCAAATTTAAACTCTACCAAGACATTGATGCCAC
AATAAGGCACAAAAACTGTGACATTGTGCTGTCAGATACAGACACAGAGA
GATGTCAGCATTGTCATATTAACAGAAGGTCATTAATGACAATGGAAAGA
CGAAAGTCTGTGGAAGATCTAGAGCCAAAGGCTAAAAAGCCTCACAGCTC
TATGACTAAACAACACTTAAAAAACCGACTTAAAGCTGTGGCCAAGGAAA
ACAGGGATCTGAAACGGAAACAACGTAAGatggaaaagaaaattgaaaag
ctGGTGAAGACAAAAGGTGTGCGCATTAAAGACAAAGGAACACAACAAGT
TGTTGACAATGTGATGAATGGAGAATGTCCCTTTGACCAAAAATCACCCA
TGTTTCTACTTTGGGAACAGCAGAAAAAAGCTGCAAAGCTCAAGAAACCA
ACTTCAATGAGATGGCATCCTGTCATGATACGCTGGTGCTTGATCATATA
TTTACGGAGTCCAGGTAAGGGTTTAGGTTATGGCATAGTGATTAACAAAA
GAATCCAGATATGGGTAGTCGTCACTGAATAAACTTaaactataattttt
ttgagccaaaaactactaaatttcattttcagccCATGAACTGTTGACAT
GAAATCTATCAAatagaaattcaagaaataaatcCCAAGAAAGCAGAACA
GCATTTACATTAATGAAAACAATTCAAGTTTATTT Run BLAST on NCBI protein sequence of TCONS_00042156-protein >TCONS_00042156-protein ID=TCONS_00042156-protein|Name=TCONS_00042156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MTMERRKSVEDLEPKAKKPHSSMTKQHLKNRLKAVAKENRDLKRKQRKME
KKIEKLVKTKGVRIKDKGTQQVVDNVMNGECPFDQKSPMFLLWEQQKKAA
KLKKPTSMRWHPVMIRWCLIIYLRSPGKGLGYGIVINKRIQIWVVVTE Run BLAST on NCBI transcript from alignment at sc0003239:9620..11684- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042156 ID=TCONS_00042156|Name=TCONS_00042156|organism=Clytia hemisphaerica|type=transcript|length=2065bp|location=Sequence derived from alignment at sc0003239:9620..11684- (Clytia hemisphaerica)
GGCCAAACTGTTTATTTAAATCACGTGATAAGTTTTTATTTCTCGCTCAT
GAGGACGACACATCGAAAATCCACACATTTTTGAATCGTCTTGTGGGAAG
GAAAGAAAGCTCGTCTTATTGTGAAAATTTTTATCTCTTTTACTGGTTTA
CTGTTGGACACTGATTTTTGGACAACCCTCTATTTGACCTTACTGTTTAA
CTTGACTGGATTTGTTTTGGACATTGATTTTTGGAAAACCCTCAATTTAT
AATTTGATCTCACAACCGTTTTTAACTGAGCTGGATTCGTTTTTGGACAT
TGATTTTTGCATAAACCTATTGAATTTCATATCGTTTAACTGAACTGGAC
TTGATTTTGGACATTAATTTTTGGACAACCCTCAATCTGATATCTACTGT
GTAACTGGACTTGATTTGTTTTTGGACATTGAGTATTGGTATTAACCCTC
TAAATTTCATGAACTGTTTTTACTGGCTGACTGGACTGGACTGAATTTGT
TTTTGACATTGACTTTTGGACAACCCTCTATTGTATTTGATCTTATCGTT
TAAACGGACTTGATTTGTTGATTGTTTTGGACATACTCTATATTGGACAG
CCCACATAATGCTAATTTTGTTATTTTAATGACACTGTTTTACATTTTAT
AAAATGGATGACCACATCAAAGCACTTTCTGACATATGTCGTCTTTGTCG
TGGTGAAGTTATTCTTCAACCAGGCTATGTTACTTCAAAAACAGTGCTAG
AATGTAAAGATAAAATTGGGAAGCTGTTTTGTTATGACATTTCTTCTAAT
GACTGGTTATCTGTTCACCCTCAGAAGATATGTGCCAAATGTGCTCGTAA
ATTGAAACGAGTTTCAAACCCTAAACCTCAGGCAATTGCAGAATTTGAAA
TTCATTCAGAAGCTGATTGCGACGTTTGCTCTAGTACATTGAGCCTTCAC
GATTTTAAAGTCTCCAATGAGAAATTGCTTCCTTTGTCAGACAAAATCTT
ATAATGTGCGAAGCAAAATGGATTTGTTTATGGAGAAAATTTTAAAACAT
TTACATTTTTGAGAATTAAGGACAGTGTTAATGCTCCAATTATTGACATG
ACATTGTACGTAACAAAAGACCTTTTATCTGATGATTACAGATAGCATTT
GATAAGATCCTGTCTCTAGATAATGTACCACAACTAAAATTAGTTGACAG
AATAATAAATCGTGGAAATGTTGATAAAATTTTCAACCAATTGGGATTGT
TGTCTTTTTGTCCTGGCAACAGTGACCTTGATTATTTGATTTCCGCACGT
AAAGAAGACAAATCAGCAGATCACGGAAAAACTGTTTTGGAAGACACCAA
ATTTAAACTCTACCAAGACATTGATGCCACAATAAGGCACAAAAACTGTG
ACATTGTGCTGTCAGATACAGACACAGAGAGATGTCAGCATTGTCATATT
AACAGAAGGTCATTAATGACAATGGAAAGACGAAAGTCTGTGGAAGATCT
AGAGCCAAAGGCTAAAAAGCCTCACAGCTCTATGACTAAACAACACTTAA
AAAACCGACTTAAAGCTGTGGCCAAGGAAAACAGGGATCTGAAACGGAAA
CAACGTAAGATGGAAAAGAAAATTGAAAAGCTGGTGAAGACAAAAGGTGT
GCGCATTAAAGACAAAGGAACACAACAAGTTGTTGACAATGTGATGAATG
GAGAATGTCCCTTTGACCAAAAATCACCCATGTTTCTACTTTGGGAACAG
CAGAAAAAAGCTGCAAAGCTCAAGAAACCAACTTCAATGAGATGGCATCC
TGTCATGATACGCTGGTGCTTGATCATATATTTACGGAGTCCAGGTAAGG
GTTTAGGTTATGGCATAGTGATTAACAAAAGAATCCAGATATGGGTAGTC
GTCACTGAATAAACTTAAACTATAATTTTTTTGAGCCAAAAACTACTAAA
TTTCATTTTCAGCCCATGAACTGTTGACATGAAATCTATCAAATAGAAAT
TCAAGAAATAAATCCCAAGAAAGCAGAACAGCATTTACATTAATGAAAAC
AATTCAAGTTTATTT Coding sequence (CDS) from alignment at sc0003239:9620..11684- >TCONS_00042156 ID=TCONS_00042156|Name=TCONS_00042156|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0003239:9620..11684- (Clytia hemisphaerica)
ATGACAATGGAAAGACGAAAGTCTGTGGAAGATCTAGAGCCAAAGGCTAA
AAAGCCTCACAGCTCTATGACTAAACAACACTTAAAAAACCGACTTAAAG
CTGTGGCCAAGGAAAACAGGGATCTGAAACGGAAACAACGTAAGATGGAA
AAGAAAATTGAAAAGCTGGTGAAGACAAAAGGTGTGCGCATTAAAGACAA
AGGAACACAACAAGTTGTTGACAATGTGATGAATGGAGAATGTCCCTTTG
ACCAAAAATCACCCATGTTTCTACTTTGGGAACAGCAGAAAAAAGCTGCA
AAGCTCAAGAAACCAACTTCAATGAGATGGCATCCTGTCATGATACGCTG
GTGCTTGATCATATATTTACGGAGTCCAGGTAAGGGTTTAGGTTATGGCA
TAGTGATTAACAAAAGAATCCAGATATGGGTAGTCGTCACTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042156-exon-sc0003239-1575043694:11258..11684 | TCONS_00042156-exon-sc0003239-1575043694:11258..11684 | Clytia hemisphaerica | exon |
| TCONS_00042156-exon-sc0003239-1575043694:9620..11177 | TCONS_00042156-exon-sc0003239-1575043694:9620..11177 | Clytia hemisphaerica | exon |
| TCONS_00042156-exon-sc0003239-1510915933:11258..11684 | TCONS_00042156-exon-sc0003239-1510915933:11258..11684 | Clytia hemisphaerica | exon |
| TCONS_00042156-exon-sc0003239-1510915933:9620..11177 | TCONS_00042156-exon-sc0003239-1510915933:9620..11177 | Clytia hemisphaerica | exon |
| TCONS_00042156-exon-sc0003239-1491911889:11258..11684 | TCONS_00042156-exon-sc0003239-1491911889:11258..11684 | Clytia hemisphaerica | exon |
| TCONS_00042156-exon-sc0003239-1491911889:9620..11177 | TCONS_00042156-exon-sc0003239-1491911889:9620..11177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003239 | supercontig | sc0003239:9620..11684 - |
Blast
The following BLAST results are available for this feature:
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