TCONS_00042155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042155
Unique NameTCONS_00042155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042155 ID=TCONS_00042155|Name=TCONS_00042155|organism=Clytia hemisphaerica|type=transcript|length=1980bp
attttgttCTGCTTTCTTTCTCTTTCTGCTCTATTGTATATTCAACCTTT
TGCTAATCTTTTGATTTCTTAGCACCTACGAACAACTACACTAGCTTCAC
GTCAATTGGTGCCTCTTTTAACCCTGATGTTATCACAAAGTTCTGTAAAG
AACAAAAACTTGACGAAGCTCCTGCTCATCAAAGAATCTGCTCTGTAATG
TTTGATGAGATGAAAATCAAGTCTGGTCTCGTTTTCAGCAGATCAACTGG
GACCATCATCGGCTTTACTGAGCTTGGTAAGATTTCTGACGAGATTGACA
GTCTTGAGAGATCCCTGGAAAAGGAGAGGAAGAAACTCAGGCCACTAGCA
ACTCACGTGTTAGCCATAATGATTAGAGGCTTTTTCCACCATTTCAATTT
GCCTATTGGATTTCATGCAACAAAATCTGCCTCAGCTGAACAGCTATTTG
CAATAATTTGGGAAGCTGTTGGTGTCCTAGAGATGGTTAATTTCAACGTA
CACGCATTTGTATGTGATGGTGCTTCTGCTAATCGgaagttttttgaaat
gcatCGATTATAGGATGGTTCCAATGTATCCCTTGATGGTGTTGTGTATT
GGGCTCACAATCGCTTTGCTCCCGGGTGTAAGATATATTTCTTCAGTGAT
GTACCCCATCTCGTGAAAACGATCAGAAATAATCTTGAAAATTCTGGCTC
CAACAAAAAGACAAGAAAGCTAACGATAAATGGAGAGGATTTGAGTTCGA
ATACTATCCAGGCATTCTACGAATTCGACCTAAATAGGGCATCTCTATCA
CCTGGACTACGCAAATGTTCGAAGTTAACACATGATCACATTGTACTTGG
GCCACGAACAAGAATGAGAGTCAACCTTGCTGTCCAAattTTAAGTAACT
CAATGGCGGATGGACTGGAATTTTGGATGCAAGCAATGAAGAAACAGTCG
ATTAGCGAGTTGATTGGCTTCATCAGAAAATGTGACAAATTTTTTGATCT
TATGAATGTTACGCACACGTATGTAGGTCAAAAACTAAGGAAACCTGCAT
TAGATCCTGTGAAGCCGAATGACATACCAAGCATGACAAAGTTTGAAGTA
AGCTAAATTGGATCCAACTATTCCAACTATTAGATTTGAGACATTTCCAA
AATACCCCAAAAAAAATACCCAACTGAATTTTTCAAATCCTTTTGTATAg
ataatgaatgaaattttggtCTCTCATAATAGTCCATATCTGAACACGTA
AACTGTCACTGTGATGTATTTAGCTATTTTTCAAGCAGAAGGAGGTAGct
cttttacttttaaaaccGATGAATAATGATAAATCTATTAAacgtaaatt
atttttgaaggaCACATTTCTTGCTTATATCAACAATTGGCAAAAAGAGA
CCAAAAAGCTCAAGCTGCCTGCTAAGGAACAAGCCAAGTATTGCATTAGT
CTGAAAACGCTAGATGGTATCAGGATGACAGTCCATTCTTACTGCGAAAT
GGTTCCAGAGCTATTAAAATTGGACGGCGTGGACATGTTTCTGTCGGACA
AATTAAACCAAGATCCTGTAGAAGAACAGTTTGCGAAACATAGAGCTAGC
AGTGTTGAAAACCCGCAACTCGAATGGTATATGATGACTGAGAGAAAACT
GATCGTTGCGAAATCCAAAATGGTAGTTGCAATCAACGGTAACTTTCGTG
GAAGAACAAAGCGAAAAGTAGCTATAGAAATCGACGACTTAACTTTAGTA
GCTGAACATTGTATGGAAGTGAATTATCTTTTGATCAACTTTtatataga
aataaaacttttttgaggAATTTTGTAGAATCGcgcttttcgtttttttt
taaatatcttatACCTATAAATATTTGGCTATATTAACAAAGTAAAAAGG
TTTTGTGATCAGGATAATATTATCATTACATCAGTACTACTTACTTATTG
TCAAATATAATGTTTCTCATTTATGGCCAA
Run BLAST on NCBI

protein sequence of TCONS_00042155-protein

>TCONS_00042155-protein ID=TCONS_00042155-protein|Name=TCONS_00042155-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MNNDKSIKRKLFLKDTFLAYINNWQKETKKLKLPAKEQAKYCISLKTLDG
IRMTVHSYCEMVPELLKLDGVDMFLSDKLNQDPVEEQFAKHRASSVENPQ
LEWYMMTERKLIVAKSKMVVAINGNFRGRTKRKVAIEIDDLTLVAEHCME
VNYLLINFYIEIKLF
Run BLAST on NCBI

transcript from alignment at sc0003239:6147..9457-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042155 ID=TCONS_00042155|Name=TCONS_00042155|organism=Clytia hemisphaerica|type=transcript|length=3311bp|location=Sequence derived from alignment at sc0003239:6147..9457- (Clytia hemisphaerica)
ATTTTGTTCTGCTTTCTTTCTCTTTCTGCTCTATTGTATATTCAACCTTT
TGCTAATCTTTTGATTTCTTAGCACCTACGAACAACTACACTAGCTTCAC
GTCAATTGGTGCCTCTTTTAACCCTGATGTTATCACAAAGTTCTGTAAAG
AACAAAAACTTGACGAAGCTCCTGCTCATCAAAGAATCTGCTCTGTAATG
TTTGATGAGATGAAAATCAAGTCTGGTCTCGTTTTCAGCAGATCAACTGG
GACCATCATCGGCTTTACTGAGCTTGGTAAGATTTCTGACGAGATTGACA
GTCTTGAGAGATCCCTGGAAAAGGAGAGGAAGAAACTCAGGCCACTAGCA
ACTCACGTGTTAGCCATAATGATTAGAGGCTTTTTCCACCATTTCAATTT
GCCTATTGGATTTCATGCAACAAAATCTGCCTCAGCTGAACAGCTATTTG
CAATAATTTGGGAAGCTGTTGGTGTCCTAGAGATGGTTAATTTCAACGTA
CACGCATTTGTATGTGATGGTGCTTCTGCTAATCGGAAGTTTTTTGAAAT
GCATCGATTATAGGATGGTTCCAATGTATCCCTTGATGGTGTTGTGTATT
GGGCTCACAATCGCTTTGCTCCCGGGTGTAAGATATATTTCTTCAGTGAT
GTACCCCATCTCGTGAAAACGATCAGAAATAATCTTGAAAATTCTGGCTC
CAACAAAAAGACAAGAAAGCTAACGGTAAGAACAAATTTTACTATTGATA
ACCACTCAATTCAAACCAGTATCCACTTTTCACTACTTTCTGCTGCTTTT
CATAGTTCAAACCTTTCAAAACACCAAAGGAATAAAGGGACCAGAAAATC
TTCTTCTGGAAAGGGGAAACAAGAATGTACTTTGTGCGCTTTATGTACTT
TGTAAGGGGAGATTCCTAGATATTTTCCATTTTTAAAAGTCAATTTTATT
ATGTCCAAATGGTAGAAAACTAAAACACTCAGTATTTCCAGGCTTAAAAA
CATTTTCTAAGGTTAAGGGTCATTTCTTTCACACTTAGCCTTTTACACCT
TTAACAGAACTAATATTCAATCAATTTTATTTAATTTTTACCCCTGATAA
GATTTATTTATTTATTTTTACTTTATTTAGAACAATTTTTCTTATGCAAA
ATGTTAATTTTTTTCAACGCTTCAGATAAATGGAGAGGATTTGAGTTCGA
ATACTATCCAGGCATTCTACGAATTCGACCTAAATAGGGCATCTCTATCA
CCTGGACTACGCAAATGTTCGAAGTTAACACATGATCACATTGTACTTGG
GCCACGAACAAGAATGAGAGTCAACCTTGCTGTCCAAGTAAGCACACTCA
GTTTTGTTCATTTTTCTTGCAATTTTCTGTTAAAATCGGAAGGTTCTGGC
TCATTTCAGGGTGTCAGGATCCAGATACCAAACCTAGGACTGGGGACAGT
GTCAATAATTTTTTTCAAAATTAAAAAAGGAAGATCAATACCAAAATGAG
GGGTCAAGGCCTATTTTTTTTTATTTTTTTTTTTGAAACTGGTATCTGAA
TGGAGATATTTTTTTTTACTTTTGAATAATTATCGGGCAAAATCTCCAAA
AATTCTATTTTTTGCAAATATTTCATGTTCTATAAAAAACTTTTTTTGCG
ATTTATCATATAAAGTTTCTTTTTCAATGGATGTAGAGGAACATTTCTTA
ATTTGCTGCCAATTTTCATCTTCAAGCGGTGGTGTCTAACTTCCAAATAA
TGACTCCTTTTGTTCCATCAATTTAGTTATCCCTAGTCAGGATTTAGCAT
ATTTCATTTTTAGGTTTTTCTTTTGTTTAGATTTTAAGTAACTCAATGGC
GGATGGACTGGAATTTTGGATGCAAGCAATGAAGAAACAGTCGATTAGCG
AGTTGATTGGCTTCATCAGAAAATGTGACAAATTTTTTGATCTTATGAAT
GTTACGCACACGTATGTAGGTCAAAAACTAAGGAAACCTGCATTAGATCC
TGTGAAGCCGAATGACATACCAAGCATGACAAAGTTTGAAGTAAGCTAAA
TTGGATCCAACTATTCCAACTATTAGATTTGAGACATTTCCAAAATACCC
CAAAAAAAATACCCAACTGAATTTTTCAAATCCTTTTGTATAGATAATGA
ATGAAATTTTGGTCTCTCATAATAGTCCATATCTGAACACGTAAACTGTC
ACTGTGATGTATTTAGCTATTTTTCAAGCAGAAGGAGGTAGCTCTTTTAC
TTTTAAAACCGATGAATAATGATAAATCTATTAAACGTAAATTATTTTTG
AAGGACACATTTCTTGCTTATATCAACAATTGGCAAAAAGAGACCAAAAA
GCTCAAGCTGCCTGCTAAGGAACAAGCCAAGTATTGCATTAGTCTGAAAA
CGCTAGATGGTATCAGGATGACAGGTACAGGACATAATTTGTGATTATAT
ATTTTTTGTCTATATCTTTATAAGATTACCAGGCTCGAGACTCAAGTCTA
GAAGTTTCAGGACATCGCCATATGAAGATTCACTCGTTGTTATGATCGTT
TTCCCCTTCCTTTATCGTTTTTCGTGCTGAATACAGTGTCCAAAGTACTT
CCGTCTTAGACAGATTTCGTCTAAAAGCACAGTAAAATATCAGCAAGAAA
ATTCCAAAGACTTTAACCTAGCTTTGTGTAAAACCCCTTTTATTTGCATG
TGAATGTAGGTGTTGAGATCTGTGCATAATTTATCGCACGCACATCCAAA
ATAAGCCAGGTTGGGATTTTTTGTACTTTTTCTATAGTTCTGATTATTTT
TCTCTTTTCCAGTCCATTCTTACTGCGAAATGGTTCCAGAGCTATTAAAA
TTGGACGGCGTGGACATGTTTCTGTCGGACAAATTAAACCAAGATCCTGT
AGAAGAACAGTTTGCGAAACATAGAGCTAGCAGTGTTGAAAACCCGCAAC
TCGAATGGTATATGATGACTGAGAGAAAACTGATCGTTGCGAAATCCAAA
ATGGTAGTTGCAATCAACGGTAACTTTCGTGGAAGAACAAAGCGAAAAGT
AGCTATAGAAATCGACGACTTAACTTTAGTAGCTGAACATTGTATGGAAG
TGAATTATCTTTTGATCAACTTTTATATAGAAATAAAACTTTTTTGAGGA
ATTTTGTAGAATCGCGCTTTTCGTTTTTTTTTAAATATCTTATACCTATA
AATATTTGGCTATATTAACAAAGTAAAAAGGTTTTGTGATCAGGATAATA
TTATCATTACATCAGTACTACTTACTTATTGTCAAATATAATGTTTCTCA
TTTATGGCCAA

Coding sequence (CDS) from alignment at sc0003239:6147..9457-

>TCONS_00042155 ID=TCONS_00042155|Name=TCONS_00042155|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0003239:6147..9457- (Clytia hemisphaerica)
TCCATTCTTACTGCGAAATGGTTCCAGAGCTATTAAAATTGGACGGCGTG
GACATGTTTCTGTCGGACAAATTAAACCAAGATCCTGTAGAAGAACAGTT
TGCGAAACATAGAGCTAGCAGTGTTGAAAACCCGCAACTCGAATGGTATA
TGATGACTGAGAGAAAACTGATCGTTGCGAAATCCAAAATGGTAGTTGCA
ATCAACGGTAACTTTCGTGGAAGAACAAAGCGAAAAGTAGCTATAGAAAT
CGACGACTTAACTTTAGTAGCTGAACATTGTATGGAAGTGAATTATCTTT
TGATCAACTTTTATATAGAAATAAAACTTTTTTGAATGAATAATGATAAA
TCTATTAAACGTAAATTATTTTTGAAGGACACATTTCTTGCTTATATCAA
CAATTGGCAAAAAGAGACCAAAAAGCTCAAGCTGCCTGCTAAGGAACAAG
CCAAGTATTGCATTAGTCTGAAAACGCTAGATGGTATCAGGATGACAGTC
CATTCTTACTGCGAAATGGTTCCAGAGCTATTAAAATTGGACGGCGTGGA
CATGTTTCTGTCGGACAAATTAAACCAAGATCCTGTAGAAGAACAGTTTG
CGAAACATAGAGCTAGCAGTGTTGAAAACCCGCAACTCGAATGGTATATG
ATGACTGAGAGAAAACTGATCGTTGCGAAATCCAAAATGGTAGTTGCAAT
CAACGGTAACTTTCGTGGAAGAACAAAGCGAAAAGTAGCTATAGAAATCG
ACGACTTAACTTTAGTAGCTGAACATTGTATGGAAGTGAATTATCTTTTG
ATCAACTTTTATATAGAAATAAAACTTTTTTGAATGAATAATGATAAATC
TATTAAACGTAAATTATTTTTGAAGGACACATTTCTTGCTTATATCAACA
ATTGGCAAAAAGAGACCAAAAAGCTCAAGCTGCCTGCTAAGGAACAAGCC
AAGTATTGCATTAGTCTGAAAACGCTAGATGGTATCAGGATGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026025XLOC_026025Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042155-proteinTCONS_00042155-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042155-exon-sc0003239-1575043694:8733..9457TCONS_00042155-exon-sc0003239-1575043694:8733..9457Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1575043694:8121..8282TCONS_00042155-exon-sc0003239-1575043694:8121..8282Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1575043694:7034..7627TCONS_00042155-exon-sc0003239-1575043694:7034..7627Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1575043694:6147..6645TCONS_00042155-exon-sc0003239-1575043694:6147..6645Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1510915933:8733..9457TCONS_00042155-exon-sc0003239-1510915933:8733..9457Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1510915933:8121..8282TCONS_00042155-exon-sc0003239-1510915933:8121..8282Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1510915933:7034..7627TCONS_00042155-exon-sc0003239-1510915933:7034..7627Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1510915933:6147..6645TCONS_00042155-exon-sc0003239-1510915933:6147..6645Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1491911889:8733..9457TCONS_00042155-exon-sc0003239-1491911889:8733..9457Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1491911889:8121..8282TCONS_00042155-exon-sc0003239-1491911889:8121..8282Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1491911889:7034..7627TCONS_00042155-exon-sc0003239-1491911889:7034..7627Clytia hemisphaericaexon
TCONS_00042155-exon-sc0003239-1491911889:6147..6645TCONS_00042155-exon-sc0003239-1491911889:6147..6645Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003239supercontigsc0003239:6147..9457 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0417	0.918142	0.612412	0.377243	2.40434	1.75051	2.83306	2.2906	1.36737	2.71829	1.66425	3.00186	3.50396	2.42132	1.61527	2.002	1.69934	1.83425	6.32465	8.82438	2.75035	2.86255	2.25096	2.23439	0.0215081	0.115173	5.32892	4.6025	4.91385	4.30418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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