TCONS_00042152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042152
Unique NameTCONS_00042152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042152 ID=TCONS_00042152|Name=TCONS_00042152|organism=Clytia hemisphaerica|type=transcript|length=592bp
CATATCTACAGCAATTGTCATCAAACCAAAATGCCAATTTTGAAGGCAAA
TGGGTGCAATCGAAATCAATAATCGACAGTAACAGCAATCTagttaaaaa
gatttatttGTATCGTAAGCTTAAAAATGCTTATGATTGTAAATATCTCA
TCGATATTGTGGCCAACCAAACGGAAACCGTTAAGCTTCTTACACTTCCT
GGAAGCAAAGATATGCTGATTAACAACCTTAAGGCTTTTGGTTTTCAGCT
ATTTGGAAACCAATCTGATTTGATCTACATATTGGCAGTAGCAGTTGTTA
ACCTCTTGAATAAAACTCGCGACGAATCATTAATCAGCAACNCACATATT
GGCAGTAGCAGTTGTTAACCTCTTGAATAAAACTCGCGACGAATCATTAA
TCAGCAACttaaatgttaagaaaattacAAAGAATTCCAGTGCGGAAAAC
gtgaaagaaatttttcagGCTGTCAGCCTTTCAGCTAACATCCAAGAATT
AGTTGATTTCATTTCAATTGGACTTATCGTTTACACGGGCTTTGTCGATG
TTCCTGTGATAACAATTCTGCCCTCCACGTGTGTATCCGTTA
Run BLAST on NCBI

protein sequence of TCONS_00042152-protein

>TCONS_00042152-protein ID=TCONS_00042152-protein|Name=TCONS_00042152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
YLQQLSSNQNANFEGKWVQSKSIIDSNSNLVKKIYLYRKLKNAYDCKYLI
DIVANQTETVKLLTLPGSKDMLINNLKAFGFQLFGNQSDLIYILAVAVVN
LLNKTRDESLISNXHIGSSSC
Run BLAST on NCBI

transcript from alignment at sc0003236:1..946-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042152 ID=TCONS_00042152|Name=TCONS_00042152|organism=Clytia hemisphaerica|type=transcript|length=946bp|location=Sequence derived from alignment at sc0003236:1..946- (Clytia hemisphaerica)
CATATCTACAGCAATTGTCATCAAACCAAAATGCCAATTTTGAAGGTAAT
TTTTCTCAGATTAAGGTGGTTTTTACACAGTAGCGCTATACCAAGGGCAG
CCCACCTCATATTTCGTGTGGCCGATTTTTTTACTAAAATGCTCCTCGGA
ACACAACTTCTGGATACACTCTCCTGGTTTAATCCCACAAAAAGAGTAGC
ATCCAAAATGAATAGTCAAATAAATTAACAGGCAGGGAGCGTTTAAAGAC
AGCTAAGAGTAAAGACAAGAATTCTATTTTGGATGCATGTATATACCCCT
ATGGATTGCACATACCCGTCACCATGCTTGAGTACCCCCGCATGAGCCAA
CCCATAATTTAAGTTTGATAATTATCCTTTTTTTATCTTTTCCTTGTAGG
CAAATGGGTGCAATCGAAATCAATAATCGACAGTAACAGCAATCTAGTTA
AAAAGATTTATTTGTATCGTAAGCTTAAAAATGCTTATGATTGTAAATAT
CTCATCGATATTGTGGCCAACCAAACGGAAACCGTTAAGCTTCTTACACT
TCCTGGAAGCAAAGATATGCTGATTAACAACCTTAAGGCTTTTGGTTTTC
AGCTATTTGGAAACCAATCTGATTTGATCTACATATTGGCAGTAGCAGTT
GTTAACCTCTTGAATAAAACTCGCGACGAATCATTAATCAGCAACNCACA
TATTGGCAGTAGCAGTTGTTAACCTCTTGAATAAAACTCGCGACGAATCA
TTAATCAGCAACTTAAATGTTAAGAAAATTACAAAGAATTCCAGTGCGGA
AAACGTGAAAGAAATTTTTCAGGCTGTCAGCCTTTCAGCTAACATCCAAG
AATTAGTTGATTTCATTTCAATTGGACTTATCGTTTACACGGGCTTTGTC
GATGTTCCTGTGATAACAATTCTGCCCTCCACGTGTGTATCCGTTA

Coding sequence (CDS) from alignment at sc0003236:1..946-

>TCONS_00042152 ID=TCONS_00042152|Name=TCONS_00042152|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0003236:1..946- (Clytia hemisphaerica)
GCAAATGGGTGCAATCGAAATCAATAATCGACAGTAACAGCAATCTAGTT
AAAAAGATTTATTTGTATCGTAAGCTTAAAAATGCTTATGATTGTAAATA
TCTCATCGATATTGTGGCCAACCAAACGGAAACCGTTAAGCTTCTTACAC
TTCCTGGAAGCAAAGATATGCTGATTAACAACCTTAAGGCTTTTGGTTTT
CAGCTATTTGGAAACCAATCTGATTTGATCTACATATTGGCAGTAGCAGT
TGTTAACCTCTTGAATAAAACTCGCGACGAATCATTAATCAGCAACNCAC
ATATTGGCAGTAGCAGTTGTTAATATCTACAGCAATTGTCATCAAACCAA
AATGCCAATTTTGAAGGCAAATGGGTGCAATCGAAATCAATAATCGACAG
TAACAGCAATCTAGTTAAAAAGATTTATTTGTATCGTAAGCTTAAAAATG
CTTATGATTGTAAATATCTCATCGATATTGTGGCCAACCAAACGGAAACC
GTTAAGCTTCTTACACTTCCTGGAAGCAAAGATATGCTGATTAACAACCT
TAAGGCTTTTGGTTTTCAGCTATTTGGAAACCAATCTGATTTGATCTACA
TATTGGCAGTAGCAGTTGTTAACCTCTTGAATAAAACTCGCGACGAATCA
TTAATCAGCAACNCACATATTGGCAGTAGCAGTTGTTAATATCTACAGCA
ATTGTCATCAAACCAAAATGCCAATTTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026022XLOC_026022Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042152-proteinTCONS_00042152-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042152-exon-sc0003236-1575043694:902..946TCONS_00042152-exon-sc0003236-1575043694:902..946Clytia hemisphaericaexon
TCONS_00042152-exon-sc0003236-1575043694:1..547TCONS_00042152-exon-sc0003236-1575043694:1..547Clytia hemisphaericaexon
TCONS_00042152-exon-sc0003236-1510915933:902..946TCONS_00042152-exon-sc0003236-1510915933:902..946Clytia hemisphaericaexon
TCONS_00042152-exon-sc0003236-1510915933:1..547TCONS_00042152-exon-sc0003236-1510915933:1..547Clytia hemisphaericaexon
TCONS_00042152-exon-sc0003236-1491911889:902..946TCONS_00042152-exon-sc0003236-1491911889:902..946Clytia hemisphaericaexon
TCONS_00042152-exon-sc0003236-1491911889:1..547TCONS_00042152-exon-sc0003236-1491911889:1..547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003236supercontigsc0003236:1..946 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.833681	1.53561	0.419527	0.307831	2.62328	1.87553	1.78638	1.4494	0.702527	0.773505	0	0.925378	0.369637	0.575807	0.473391	0.338681	0.903992	0.926563	0.295407	0.824326	1.07473	0.786326	0.743464	1.25527	0.198908	0.887603	0.127016	0.542218	0.514067	0.104751
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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