TCONS_00042151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042151
Unique NameTCONS_00042151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042151 ID=TCONS_00042151|Name=TCONS_00042151|organism=Clytia hemisphaerica|type=transcript|length=1360bp
aaaatgaagaaatgttatcttctttctttgtttatcattttGCTGTTGAT
TACAAATACTTCACCTAACCAATATCACCTCATTACATCTAATGGTCATC
CTTCTAAAGACCCTTACTTCACATTTTCATCCAAGTTCAAAGAACAATGT
ATAAGTGTCTGTGGTACCACTTGTAAATGCCATTCCTACTCCATCAAACA
AACATCCAGTAATCATTATGAATGTCAATTTTTCGATAGTGCTACCATGC
GTGAAGATCTGGTCAGAGTTTCTTATCGAATTCGCTACTTCATCAATGCC
AGGGATTGTAAAGATTGGTACAGCATTGGAGCGAGGGCGTCGGGTGTTTA
CAAGGTGAACTGGATGGggcgttttttgaaaaatatcagatGCAACATGG
ATATTGAGGGCGGAGGGTGGATTGTTTTCCAACGACGATATCAGCCTCGC
CACTTAGATTTCCAACGCTCTTGGAATGATTACAAAGTAGGCTTTGGTGA
CCCACATCGAGAGTTTTGGCTAGGAAACGATTTTATCCATGAAATGAGTG
TCTCTGCGAAGCATGATTTTTTGGTGCACGCTGAAGCGTACACAGGCGAC
ACCGCCATCTCAAGATACGGTGAATTTTACATCGATAACGAGAGTCAAGA
TTATACTCTTCATTTCAATGAAACTCTACTGACCGGGATAGAATCTTTGA
CGAGTCGACAAAACCTGAACGGAATGAAGTTCCATACACGTGATCGAGAT
TACGGATCACCTTGTTTTCCAAACGGTCACGGTCCGTTCTGGTTTAATAG
ATGTGTGTGGCTTGATCCGAACCGGCCCGATTATCTCCGCTGGAGAACGT
ATGCCGGTAGTGATGTGATTCAGGAAATTCAATTGATGTTTAAAGCTACA
GGTCCGAACTAAGGACAAATTAGAGACTTTTCTGTACGGTATTGTTCTTC
AGTCTCGGAtggatttcattacaaaagttATAAAAAGAGGCTTTTCCGTC
GTGAAGCAAAATTTGACGAAGCtaggtgaatttttttttttttttgctag
cgTGAAAAACATCCAAGAAGTTTTTTTGATATTAAAACCGAACTAAGCAA
ATTTAATTAATGCTCATTAAAGCTACATGACCGAACCAGGAACAAATTGA
CAAGATTTCCAAAGTAAACATGTTATAATGTAAATGATTTGATCTGAACA
GTCAGTAACCAATGTTTCACAGTTTAATGCTGTTTCTCGTGAATATGTAT
GCATCTTGAAGCCATTGTAAACGATCACAAGAAATCTTCAAATATGTGAA
ACTGACTTTTAAAACTTGCGAGACAATGGATGAGTTCAGCTTTGGTAAAA
GCGGTCCCAC
Run BLAST on NCBI

transcript from alignment at sc0003234:2470..3829-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042151 ID=TCONS_00042151|Name=TCONS_00042151|organism=Clytia hemisphaerica|type=transcript|length=1360bp|location=Sequence derived from alignment at sc0003234:2470..3829- (Clytia hemisphaerica)
AAAATGAAGAAATGTTATCTTCTTTCTTTGTTTATCATTTTGCTGTTGAT
TACAAATACTTCACCTAACCAATATCACCTCATTACATCTAATGGTCATC
CTTCTAAAGACCCTTACTTCACATTTTCATCCAAGTTCAAAGAACAATGT
ATAAGTGTCTGTGGTACCACTTGTAAATGCCATTCCTACTCCATCAAACA
AACATCCAGTAATCATTATGAATGTCAATTTTTCGATAGTGCTACCATGC
GTGAAGATCTGGTCAGAGTTTCTTATCGAATTCGCTACTTCATCAATGCC
AGGGATTGTAAAGATTGGTACAGCATTGGAGCGAGGGCGTCGGGTGTTTA
CAAGGTGAACTGGATGGGGCGTTTTTTGAAAAATATCAGATGCAACATGG
ATATTGAGGGCGGAGGGTGGATTGTTTTCCAACGACGATATCAGCCTCGC
CACTTAGATTTCCAACGCTCTTGGAATGATTACAAAGTAGGCTTTGGTGA
CCCACATCGAGAGTTTTGGCTAGGAAACGATTTTATCCATGAAATGAGTG
TCTCTGCGAAGCATGATTTTTTGGTGCACGCTGAAGCGTACACAGGCGAC
ACCGCCATCTCAAGATACGGTGAATTTTACATCGATAACGAGAGTCAAGA
TTATACTCTTCATTTCAATGAAACTCTACTGACCGGGATAGAATCTTTGA
CGAGTCGACAAAACCTGAACGGAATGAAGTTCCATACACGTGATCGAGAT
TACGGATCACCTTGTTTTCCAAACGGTCACGGTCCGTTCTGGTTTAATAG
ATGTGTGTGGCTTGATCCGAACCGGCCCGATTATCTCCGCTGGAGAACGT
ATGCCGGTAGTGATGTGATTCAGGAAATTCAATTGATGTTTAAAGCTACA
GGTCCGAACTAAGGACAAATTAGAGACTTTTCTGTACGGTATTGTTCTTC
AGTCTCGGATGGATTTCATTACAAAAGTTATAAAAAGAGGCTTTTCCGTC
GTGAAGCAAAATTTGACGAAGCTAGGTGAATTTTTTTTTTTTTTTGCTAG
CGTGAAAAACATCCAAGAAGTTTTTTTGATATTAAAACCGAACTAAGCAA
ATTTAATTAATGCTCATTAAAGCTACATGACCGAACCAGGAACAAATTGA
CAAGATTTCCAAAGTAAACATGTTATAATGTAAATGATTTGATCTGAACA
GTCAGTAACCAATGTTTCACAGTTTAATGCTGTTTCTCGTGAATATGTAT
GCATCTTGAAGCCATTGTAAACGATCACAAGAAATCTTCAAATATGTGAA
ACTGACTTTTAAAACTTGCGAGACAATGGATGAGTTCAGCTTTGGTAAAA
GCGGTCCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026021XLOC_026021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042151-exon-sc0003234-1575043694:2470..3829TCONS_00042151-exon-sc0003234-1575043694:2470..3829Clytia hemisphaericaexon
TCONS_00042151-exon-sc0003234-1510915933:2470..3829TCONS_00042151-exon-sc0003234-1510915933:2470..3829Clytia hemisphaericaexon
TCONS_00042151-exon-sc0003234-1491911889:2470..3829TCONS_00042151-exon-sc0003234-1491911889:2470..3829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003234supercontigsc0003234:2470..3829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.17219	0.047162	0.448077	0.278715	0.0831342	0.0328469	0.158513	0.212999	0.445658	0.261877	0.0477867	0.517811	3.39247	4.38495	0.380988	0.194567	0.046278	0.559753	7.51745	8.37938	1.50836	1.07661	0.157384	0	0.628781	1.39884	0.08453	0	0.0342116	0
Blast
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BLAST of TCONS_00042151 vs. Swiss-Prot (Human)
Match: ANGP1 (Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.315e-27
Identity = 67/173 (38.73%), Postives = 93/173 (53.76%), Query Frame = 1 
Query:  301 RDCKDWYSIGARASGVYKV--NWMGRFLKNIRCNMDIEGGGWIVFQRRYQPRHLDFQRSWNDYKVGFGDPHREFWLGNDFIHEMSVSAKHDFLVHAEAYTGDTAISRYGEFYIDNESQDYTLHFNETLLTGIESLTSRQNLNGMKFHTRDRDYGS---PCFPNGHGPFWFNRC 804
            RDC D Y  G   SG+Y +  N M    K + CNMD+ GGGW V Q R +   LDFQR W +YK+GFG+P  E+WLGN+FI  ++   ++   +    + G+ A S+Y  F+I NE Q+Y L+      TG     S   L+G  F T+D D  +    C     G +WF+ C
Sbjct:  284 RDCADVYQAGFNKSGIYTIYINNMPE-PKKVFCNMDVNGGGWTVIQHR-EDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGH--TGTAGKQSSLILHGADFSTKDADNDNCMCKCALMLTGGWWFDAC 452
The following BLAST results are available for this feature:
BLAST of TCONS_00042151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGP11.315e-2738.73Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2[more]
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