TCONS_00042148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042148
Unique NameTCONS_00042148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042148 ID=TCONS_00042148|Name=TCONS_00042148|organism=Clytia hemisphaerica|type=transcript|length=627bp
gtACGAACAGCCTGTGCGCGAATCAAAAAACCTATCACCTGTAAAATACG
TGTTTATGAAAGTATCGAAAAGACTGTCGAATACGCAAAAAGATTGGTAC
GAGCGGGGGCTAAGATCATCACAGTTCACGGTCGACGTCGTGAACAACGA
GGCCCGCTCACCGGTATTGCAAGTTGGGATCATATCAAAGCGGTCAAGGA
GGCTGTTTCCGTGCCCGTATTTGCTAACGGAAACATCCAGTATTTGCGGG
ACGTCGAAAAATGTATAGAGTATACCAAAGTGGATGCTGTGATGAGTGCA
GAGGGTGCATTATACAATCCCGCCATATTCACAGGGCGGCAACCGCCCGC
ATGGGAGATGGTGGATAAATACTTAGCATACTGCAATCAATATCCCACCA
ATTTGAGTTATGTGAGAGGACATTTATTTCGCATGTGGCAAAAGTGTTTG
GACAATTTCCCAGAACTGCGCCATCCGCTaggtaaagtaaagaaattcgA
AGATATGTGCAAAATATCGGATACGATCAAAGAAAAAGCCAAGGCGATCG
CGGACAAAGAAATAGAGGAGGGTAAAGACAGTGAGGAAATCGGTCAACTT
CCCTTTTGGAGATGTCAACCGTACGTT
Run BLAST on NCBI

protein sequence of TCONS_00042148-protein

>TCONS_00042148-protein ID=TCONS_00042148-protein|Name=TCONS_00042148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
VRTACARIKKPITCKIRVYESIEKTVEYAKRLVRAGAKIITVHGRRREQR
GPLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSA
EGALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCL
DNFPELRHPLGKVKKFEDMCKISDTIKEKAKAIADKEIEEGKDSEEIGQL
PFWRCQPYV
Run BLAST on NCBI

transcript from alignment at sc0003234:112..6731-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042148 ID=TCONS_00042148|Name=TCONS_00042148|organism=Clytia hemisphaerica|type=transcript|length=6620bp|location=Sequence derived from alignment at sc0003234:112..6731- (Clytia hemisphaerica)
GTACGAACAGCCTGTGCGCGAATCAAAAAACCTATCACCTGTAAAATACG
TGTTTATGAAAGTATCGAAAAGACTGTCGAATACGCAAAAAGATTGGTAC
GAGCGGGGGCTAAGGTAAGAAGATTGGAGAGTCTGTTATAAATGTTGACA
TTTGGTGCTCAGAGTCATTCACAATAGTACAAGAAAAACACATGACCATT
GATATCCTGCTGTATANGAGTCATTCACAATAGTACAAGAAAAAAGCATG
ACTATTGATATCCCGCTGCATGCTTTACTTCCTAACTAGTTGAGAGAAAA
TAAATACAAACTCTCGATGACGGAATTAATTTGTGGAGCTTTGGAGATTT
TGCTCGCCAGCTGGAAAGTACTACTATAGTTTTCTACTGAACCAACTATA
GACATACAAACAGAATAGATATTTTTTGTGTAGTCTAGGATTTTTTAGAC
AGTCTTGCGATTACTTTCATGGGATCCAGGCTATTTAAGAACTGAACGGA
ACATTTGAAGGAGCGGGGATTCGAACAGGGGACCCCTTATGGATGGACCT
AAAGAGAAAGGGAACAGGTTTTGGCCGGAGATAAATAGTCCTACAGCTAC
GATCACTGTGTACATAAAATAAACACGGTACACAGACCAGACCACATCAT
ACATACACACCCCTGTCTCAGTGCCCCGGTGGAACCTTTTCCCTCAGTGG
GGATGAAAATTTCTATTGAAATCCCAATAGGGATAGAAAATCTATTGCTT
CCAGCTCAAAAATTCCAGTGGGGATGGTTTTGGAGTCCAAATTTTTCCAT
TCAATTGTCAATGGGGATAGAATCATAGGCCAATTTCCCAGTGGGGTTGA
AAATGTAGGGTATTTTTTTCACCGGGGACGATTTTTTGGCCTATTTTTCC
ACCGGGGCGGGGGTCCACTGGGTTTTGTGACACAGGGGTGTATATACCTA
CATTATGAGAGCTAAAGAAGTACAGAATGCGCTATTACCTAAACTTTCCT
TTTTCTCAGATCATCACAGTTCACGGTCGACGTCGTGAACAACGAGGCCC
GCTCACCGGTATTGCAAGTTGGGATCATATCAAAGCGGTCAAGGAGGCTG
TTTCCGTGCCCGTATTTGCTAACGGAAACATCCAGTATTTGCGGGACGTC
GAAAAATGTATAGAGTATACCAAAGTGGATGCTGTGATGAGTGCAGGTCG
GTCTCCTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATTTTTATCAATTTTACAGTCGGACCTGCAAGATACTGAAG
TTGAGCCAGTGCGGTTAGCACGTTCGACAGTATTCACGTAGGTGTTAGAA
GTAATTCCATCAGTTATATGAGGTTATTCAGACAATGTTTTTTTTCACAC
TTTTTAGAGGGTGCATTATACAATCCCGCCATATTCACAGGGCGGCAACC
GCCCGCATGGGAGATGGTGGATAAATACTTAGCATACTGCAATCAATATC
CCACCAATTTGAGTTATGTGAGAGGACATTTATTTCGCATGTGGCAAAAG
TGGTATGTTCAAAACTCTTTTTCTCTCGTTTGAAAAATTATTTCAGGGAG
TAATTTTCGTAGATTTTGCAGTTTTCTGTTTAGCTCAACGCAGATAAAAT
AGTTTACCCCTCCCCCTGATTACCTTACCCAAATATATAGAAGTCGACAA
CTGAAAAAATATTCTTTTTTAATCGATTAAAAGTTCGTTCAACGAATCGA
GAGTTTGTGAAATCCAAAAATAATACTGACCACATTCCTATCTGACTTTC
TCCAAACCTAGTTACCCCCTCTCGATTTTCCTAATAAATGTTGAATTATT
GATATTCTCTTTACGATATATTGGCAACAAAATGCAGCCCAATTGAGCGG
TGTTTCTAAATTTCTTGGGTAGTGACTCAAAATTCGAAACCACATGAAAC
ACGAGCCAAACAAAATTTGAAATTGTTCCTTTTATTGAAAAGAAACTATT
TCAAATTTGACTTCAAATTCATTAATAAATCACATAGCTTGTTTGTTTTC
ATTACCATTTCTGTTACCATAGAAACATTTCAATGACGTATTCAGTATTA
AATTCTTATTGCGGCAAGTCTCTCTATCGATAATCAAAAATTTAAAATTT
AAAATTTAAAATCTTAAAAATAATTTTGGATACTGAGGAGTTGATTCACG
AAAAAATGAAGAAATGTTATCTTCTTTCTTTGTTTATCATTTTGCTGTTG
ATTACAAATACTTCACCTAACCAATATCACCTCATTACATCTAATGGTCA
TCCTTCTAAAGACCCTTACTTCACATTTTCATCCAAGTTCAAAGAACAAT
GTATAAGTGTCTGTGGTACCACTTGTAAATGCCATTCCTACTCCATCAAA
CAAACATCCAGTAATCATTATGAATGTCAATTTTTCGATAGTGCTACCAT
GCGTGAAGATCTGGTCAGAGTTTCTTATCGAATTCGCTACTTCATCAATG
CCAGGGATTGTAAAGATTGGTACAGCATTGGAGCGAGGGCGTCGGGTGTT
TACAAGGTGAACTGGATGGGGCGTTTTTTGAAAAATATCAGATGCAACAT
GGATATTGAGGGCGGAGGGTGGATTGTTTTCCAACGACGATATCAGCCTC
GCCACTTAGATTTCCAACGCTCTTGGAATGATTACAAAGTAGGCTTTGGT
GACCCACATCGAGAGTTTTGGCTAGGAAACGATTTTATCCATGAAATGAG
TGTCTCTGCGAAGCATGATTTTTTGGTGCACGCTGAAGCGTACACAGGCG
ACACCGCCATCTCAAGATACGGTGAATTTTACATCGATAACGAGAGTCAA
GATTATACTCTTCATTTCAATGAAACTCTACTGACCGGGATAGAATCTTT
GACGAGTCGACAAAACCTGAACGGAATGAAGTTCCATACACGTGATCGAG
ATTACGGATCACCTTGTTTTCCAAACGGTCACGGTCCGTTCTGGTTTAAT
AGATGTGTGTGGCTTGATCCGAACCGGCCCGATTATCTCCGCTGGAGAAC
GTATGCCGGTAGTGATGTGATTCAGGAAATTCAATTGATGTTTAAAGCTA
CAGGTCCGAACTAAGGACAAATTAGAGACTTTTCTGTACGGTATTGTTCT
TCAGTCTCGGATGGATTTCATTACAAAAGTTATAAAAAGAGGCTTTTCCG
TCGTGAAGCAAAATTTGACGAAGCTAGGTGAATTTTTTTTTTTTTTTGCT
AGCGTGAAAAACATCCAAGAAGTTTTTTTGATATTAAAACCGAACTAAGC
AAATTTAATTAATGCTCATTAAAGCTACATGACCGAACCAGGAACAAATT
GACAAGATTTCCAAAGTAAACATGTTATAATGTAAATGATTTGATCTGAA
CAGTCAGTAACCAATGTTTCACAGTTTAATGCTGTTTCTCGTGAATATGT
ATGCATCTTGAAGCCATTGTAAACGATCACAAGAAATCTTCAAATATGTG
AAACTGACTTTTAAAACTTGCGAGACAATGGATGAGTTCAGCTTTGGTAA
AAGCGGTCCCACACTAGGATTGTTACATGCAGTTTTTTGAAAGAAAACAT
ACCTATTGTGTAATTAGGTAATGCGTTGTTTCATTTTCCTAAAATTATAA
ATTGAATTTATTTATTTTTCATTTCAATAAAATATCGCACACAATGTCGA
CTTTTATATACAGATATAGACAAAAATACAGGCTGTTTGTAGGAAAAAAA
TAAGATCTAGCTGTTTAAAAGTCTTCTATATAGTTTTTTGAGAGCTTTCG
AATGGTATACTTGATAATGTCTGAAAATTAGTTTGAAATTTTCAAAAAAT
TTCGCCCTTAGGGTTTTGCCTGGGGAAAAAAGAAATATCCCAAAAAAGGG
ATGTTCCACCAGTGGGATTTTAGGGGATTTTTTTCTGAGGCATAACTATC
CTATAGAGAAGGTCTGGAGAAAGTTTCAGCTATATCTTATTTTTTCCCGT
AAATTATGCTAAACAACCCCACTAATATGATAAAATTGTTTTTAAAAGAT
AACCTCGCACATATCACCACATTTTTTTTGGGTGAATTCACGCTGAAAGG
CTGCATGCAATCTATTGAAAAATTTTCACCTTGCACATGAATAAAATAAA
AGTAAATTTATGTATTTTTTCATTAAACCTTCGTTTAATTGAAGGTCATT
TAGAATAAAATCTACCGAAGATAAAGACCATTTAAGAATAGGTAGCTTGA
TCCTCAAAGAACTAAGATTTTTCTTCAAATTAGATAAAGGTTCGAATTAC
CGAGTGTATTTTGAATAACTTTCCAGCTGAGGGGATTAATGTTCGATTTA
CAGAAAAATTAATATAAGATTAATAGAGATTGGAATTGGAGAGATTTGAC
TGATTTGTAATCATGTCCCACATCGATTAAGTTCTTCTTCTAAAGCAATG
TTTAAGATATTTATGTATGATATTGCAATATATTGCGAACAAGAACTGCA
CGAATCTCGTCTGCACTTGCCCATCGATACTTAACCTCGGGTGAGAACCT
CTGTACCATGAAATCACGACAGATCATTATAAATTTGTTCCAAACGTTTC
GGCCTTATCTGAGGGGGCTAGACTATATGCAAGTGCCTTCGTCGTTTTTT
AAAAAGACCAATAAATCTTTGTTGATGCTCAGTTGTTCTAATTTTTTTTA
CATTTCAAATATTTTAGGGCAATATTGAAACGTTGTAGCATTGTAGCCGG
TGTTCACTTCTTTGAACCTCAATTCCGTGATTCCAGGCTTATGAATCTGC
TGAAAATGTTAATATTTTCATTGTTCTCTACCATGAGTGCATCAACTCTC
TTGTCAATTTTTGAGGGCTATAAAATAAAGCATCTTGCAACTTTTCACGC
TCTGGAATCTTAAATACACCCTTGTATGTCTCACAGCTCCGGCGGAACCG
TTTCCTCAGAGGGGATAAAAATTCCTTTTGAAATCTCAAAGGGGATAGCA
ATTTTAATATTCTATGGTTAAAAATCCAGTGGGGATGGTTTTGGAGTGCA
ATTTTTAAACATTGGATCTCGAATGGGGATAAAATCAAAGTAAAATTCCC
AATGGGGCTGAAATTCCAGGGTATTTTCCCATCGGGGACGAAACTTTTAC
GAAATTTTCCAGTGGGGCTTGGGTCCCAGCGGGTCTGTGACACAGGGGTG
TTTAAATTAAAAGGGAACTTTTGACGTTTTCTAATACTTTGCTTTACTCT
GCTTTCAGTTTGGACAATTTCCCAGAACTGCGCCATCCGCTAGGTAAAGT
AAAGAAATTCGAAGATATGTGCAAAATATCGGATACGATCAAAGAAAAAG
CCAAGGTGAGAGAGACAGATTATATTTTTGATCGTAAAACTTCTTCTTCT
AACTGTGACTGATTCAAATTTACCTTCACGCTTATATTTGGTCTGGGAGA
TTCGACGAAGTGGATCCATCCTGTTTATAGATGTTTAATTGCCCTATAAA
TTAAGAGCGACCCTTACAGGGCGACCCGATGGCTCCCTCTTTAGCTGCTG
AGCATGCGAGAGAAAGGCGGCATTTTAAGTACCATTTTGTAAATCTTTGC
TTTGACCTGGCTGGGGATCAAGTCCACAAGATTGCCCATAGTAGCTGGAT
GCTATACTTTCATGCTACAGCTTCTTATTTCAAAAATACTATTTCAGTAC
AGTTTCCAAACCAGTTTTTAGATAATTTACCATCTCCCGTCTATTAAGTA
CCTAACCATAATCTATTCCATTTGTAGGCGATCGCGGACAAAGAAATANC
TATTAAGTACCTCACATTAATCTATTCCATTTATAGGCGATCGCGGACAA
AGAAATAGAGGAGGGTAAAGACAGTGAGGAAATCGGTCAACTTCCCTTTT
GGAGATGTCAACCGTACGTT

Coding sequence (CDS) from alignment at sc0003234:112..6731-

>TCONS_00042148 ID=TCONS_00042148|Name=TCONS_00042148|organism=Clytia hemisphaerica|type=CDS|length=3135bp|location=Sequence derived from alignment at sc0003234:112..6731- (Clytia hemisphaerica)
GCGATCGCGGACAAAGAAATAGAGGAGGGTAAAGACAGTGAGGAAATCGG
TCAACTTCCCTTTTGGAGATGTCAACCGTACGTTTTTGGACAATTTCCCA
GAACTGCGCCATCCGCTAGGTAAAGTAAAGAAATTCGAAGATATGTGCAA
AATATCGGATACGATCAAAGAAAAAGCCAAGAGGGTGCATTATACAATCC
CGCCATATTCACAGGGCGGCAACCGCCCGCATGGGAGATGGTGGATAAAT
ACTTAGCATACTGCAATCAATATCCCACCAATTTGAGTTATGTGAGAGGA
CATTTATTTCGCATGTGGCAAAAGTGATCATCACAGTTCACGGTCGACGT
CGTGAACAACGAGGCCCGCTCACCGGTATTGCAAGTTGGGATCATATCAA
AGCGGTCAAGGAGGCTGTTTCCGTGCCCGTATTTGCTAACGGAAACATCC
AGTATTTGCGGGACGTCGAAAAATGTATAGAGTATACCAAAGTGGATGCT
GTGATGAGTGCAGGTACGAACAGCCTGTGCGCGAATCAAAAAACCTATCA
CCTGTAAAATACGTGTTTATGAAAGTATCGAAAAGACTGTCGAATACGCA
AAAAGATTGGTACGAGCGGGGGCTAAGGCGATCGCGGACAAAGAAATAGA
GGAGGGTAAAGACAGTGAGGAAATCGGTCAACTTCCCTTTTGGAGATGTC
AACCGTACGTTTTTGGACAATTTCCCAGAACTGCGCCATCCGCTAGGTAA
AGTAAAGAAATTCGAAGATATGTGCAAAATATCGGATACGATCAAAGAAA
AAGCCAAGAGGGTGCATTATACAATCCCGCCATATTCACAGGGCGGCAAC
CGCCCGCATGGGAGATGGTGGATAAATACTTAGCATACTGCAATCAATAT
CCCACCAATTTGAGTTATGTGAGAGGACATTTATTTCGCATGTGGCAAAA
GTGATCATCACAGTTCACGGTCGACGTCGTGAACAACGAGGCCCGCTCAC
CGGTATTGCAAGTTGGGATCATATCAAAGCGGTCAAGGAGGCTGTTTCCG
TGCCCGTATTTGCTAACGGAAACATCCAGTATTTGCGGGACGTCGAAAAA
TGTATAGAGTATACCAAAGTGGATGCTGTGATGAGTGCAGGTACGAACAG
CCTGTGCGCGAATCAAAAAACCTATCACCTGTAAAATACGTGTTTATGAA
AGTATCGAAAAGACTGTCGAATACGCAAAAAGATTGGTACGAGCGGGGGC
TAAGGCGATCGCGGACAAAGAAATAGAGGAGGGTAAAGACAGTGAGGAAA
TCGGTCAACTTCCCTTTTGGAGATGTCAACCGTACGTTTTTGGACAATTT
CCCAGAACTGCGCCATCCGCTAGGTAAAGTAAAGAAATTCGAAGATATGT
GCAAAATATCGGATACGATCAAAGAAAAAGCCAAGAGGGTGCATTATACA
ATCCCGCCATATTCACAGGGCGGCAACCGCCCGCATGGGAGATGGTGGAT
AAATACTTAGCATACTGCAATCAATATCCCACCAATTTGAGTTATGTGAG
AGGACATTTATTTCGCATGTGGCAAAAGTGATCATCACAGTTCACGGTCG
ACGTCGTGAACAACGAGGCCCGCTCACCGGTATTGCAAGTTGGGATCATA
TCAAAGCGGTCAAGGAGGCTGTTTCCGTGCCCGTATTTGCTAACGGAAAC
ATCCAGTATTTGCGGGACGTCGAAAAATGTATAGAGTATACCAAAGTGGA
TGCTGTGATGAGTGCAGGTACGAACAGCCTGTGCGCGAATCAAAAAACCT
ATCACCTGTAAAATACGTGTTTATGAAAGTATCGAAAAGACTGTCGAATA
CGCAAAAAGATTGGTACGAGCGGGGGCTAAGGCGATCGCGGACAAAGAAA
TAGAGGAGGGTAAAGACAGTGAGGAAATCGGTCAACTTCCCTTTTGGAGA
TGTCAACCGTACGTTTTTGGACAATTTCCCAGAACTGCGCCATCCGCTAG
GTAAAGTAAAGAAATTCGAAGATATGTGCAAAATATCGGATACGATCAAA
GAAAAAGCCAAGAGGGTGCATTATACAATCCCGCCATATTCACAGGGCGG
CAACCGCCCGCATGGGAGATGGTGGATAAATACTTAGCATACTGCAATCA
ATATCCCACCAATTTGAGTTATGTGAGAGGACATTTATTTCGCATGTGGC
AAAAGTGATCATCACAGTTCACGGTCGACGTCGTGAACAACGAGGCCCGC
TCACCGGTATTGCAAGTTGGGATCATATCAAAGCGGTCAAGGAGGCTGTT
TCCGTGCCCGTATTTGCTAACGGAAACATCCAGTATTTGCGGGACGTCGA
AAAATGTATAGAGTATACCAAAGTGGATGCTGTGATGAGTGCAGGTACGA
ACAGCCTGTGCGCGAATCAAAAAACCTATCACCTGTAAAATACGTGTTTA
TGAAAGTATCGAAAAGACTGTCGAATACGCAAAAAGATTGGTACGAGCGG
GGGCTAAGGCGATCGCGGACAAAGAAATAGAGGAGGGTAAAGACAGTGAG
GAAATCGGTCAACTTCCCTTTTGGAGATGTCAACCGTACGTTTTTGGACA
ATTTCCCAGAACTGCGCCATCCGCTAGGTAAAGTAAAGAAATTCGAAGAT
ATGTGCAAAATATCGGATACGATCAAAGAAAAAGCCAAGAGGGTGCATTA
TACAATCCCGCCATATTCACAGGGCGGCAACCGCCCGCATGGGAGATGGT
GGATAAATACTTAGCATACTGCAATCAATATCCCACCAATTTGAGTTATG
TGAGAGGACATTTATTTCGCATGTGGCAAAAGTGATCATCACAGTTCACG
GTCGACGTCGTGAACAACGAGGCCCGCTCACCGGTATTGCAAGTTGGGAT
CATATCAAAGCGGTCAAGGAGGCTGTTTCCGTGCCCGTATTTGCTAACGG
AAACATCCAGTATTTGCGGGACGTCGAAAAATGTATAGAGTATACCAAAG
TGGATGCTGTGATGAGTGCAGGTACGAACAGCCTGTGCGCGAATCAAAAA
ACCTATCACCTGTAAAATACGTGTTTATGAAAGTATCGAAAAGACTGTCG
AATACGCAAAAAGATTGGTACGAGCGGGGGCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026021XLOC_026021Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042148-proteinTCONS_00042148-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042148-exon-sc0003234-1575043694:6618..6731TCONS_00042148-exon-sc0003234-1575043694:6618..6731Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1575043694:5536..5722TCONS_00042148-exon-sc0003234-1575043694:5536..5722Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1575043694:4480..4624TCONS_00042148-exon-sc0003234-1575043694:4480..4624Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1575043694:677..773TCONS_00042148-exon-sc0003234-1575043694:677..773Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1575043694:112..195TCONS_00042148-exon-sc0003234-1575043694:112..195Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1510915933:6618..6731TCONS_00042148-exon-sc0003234-1510915933:6618..6731Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1510915933:5536..5722TCONS_00042148-exon-sc0003234-1510915933:5536..5722Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1510915933:4480..4624TCONS_00042148-exon-sc0003234-1510915933:4480..4624Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1510915933:677..773TCONS_00042148-exon-sc0003234-1510915933:677..773Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1510915933:112..195TCONS_00042148-exon-sc0003234-1510915933:112..195Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1491911889:6618..6731TCONS_00042148-exon-sc0003234-1491911889:6618..6731Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1491911889:5536..5722TCONS_00042148-exon-sc0003234-1491911889:5536..5722Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1491911889:4480..4624TCONS_00042148-exon-sc0003234-1491911889:4480..4624Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1491911889:677..773TCONS_00042148-exon-sc0003234-1491911889:677..773Clytia hemisphaericaexon
TCONS_00042148-exon-sc0003234-1491911889:112..195TCONS_00042148-exon-sc0003234-1491911889:112..195Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003234supercontigsc0003234:112..6731 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.57404	1.18859	2.03906	4.97178	4.38666	6.31693	8.385	7.69761	4.40566	5.63047	5.1946	6.96184	5.48008	5.97145	3.66236	5.4163	7.02261	6.53634	0.346	3.85669	5.04304	4.92453	6.7408	8.66375	13.0864	13.3442	3.34983	1.71439	2.09562	6.85816
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001269tRNA_hU_synthase
IPR013785Aldolase_TIM
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008033 tRNA processing
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
Blast
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BLAST of TCONS_00042148 vs. Swiss-Prot (Human)
Match: DUS1L (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.097e-64
Identity = 101/204 (49.51%), Postives = 142/204 (69.61%), Query Frame = 1 
Query:   19 RIKKPITCKIRVYESIEKTVEYAKRLVRAGAKIITVHGRRREQRGPLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAEGALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCLDNFPELRHPLGKVKKFEDMCKISDTXXXXXXXXXXXXXXXGKDSEEIGQLPF-WRCQPYV 627
            ++  P+TCKIRV+  I+KTV YA+ L +AG +++TVHGR +EQ+GPL+G ASW+HIKAV++AV++PVFANGNIQ L+DVE+C+  T V  VMSAEG L+NPA+F GR P  WE+ ++YL    ++P  LSYVR HLF++W   L    ELR  L KVK  E +  +S  +K + +    ++    + ++  G LPF W CQPY+
Sbjct:  139 KLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEGIAAVSQELKLRCQEEISRQ----EGAKPTGDLPFHWICQPYI 338
The following BLAST results are available for this feature:
BLAST of TCONS_00042148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS1L1.097e-6449.51tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-li... [more]
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