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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042146 ID=TCONS_00042146|Name=TCONS_00042146|organism=Clytia hemisphaerica|type=transcript|length=2321bp
AAAATGCTTTCAGTTAAAGAGATAGGTAAAGAGCTCATGATTACCTTCAA
CAAGGAGCGTCTGGAAGAAGGCCATACTTTATCAATCTTTGATCGcatga
agaaacaaaaattaccCACTTTTTCCAATATTGCGATGTCAAAAGCAGCA
AAGCACAAGGCAAGATTAGTGGCTATTGAAAGTACGAAAGAGTTGTTTGC
AAAAATTGCTATCATCGCTCAATCTAGAGTCATCGATCTAAAACAACTCC
TCTCATTTCCCCTGATTGAGCTACCTCTGTCATTGTCAGAACCGGATGGT
ACCTTGAAGAAAACAGCCAAGTCACGACTATTACACGCGGTCGAGGGGGA
AACCACTCCAGTTGAAATGCTACAAGGAGATCACGCATTTGTCGTTGATG
GAATGGCATATGTTCGGCAGCTCAAGTCTGGTGGGTTGACTTTCGACCAG
TTCTCCACAAAGCTCTTGAAGTCAATCGTCAGCGCTACGCCATCGGCATC
TAGAATCGACGTCGTTTTTGATGTTTACTTCGAAACTTCAATCAAAGATG
TTGAACGCCAAAGGAGATCAACTGGTGAGATGACAGTCAAACAAATAGTC
TCGTCAGCACCGATCAAACAATGGGGTCAACTTCTTTCATCAGGAGAATT
CAAGAATAAGCTAATCACATACTTCCTGAACGATTGGAAAAGTAAAAGGC
ATCTGTTGGGTGACAAGATTCTCTATGTAAATGACTCCACTGAAACCTGG
AAACTAACCAAACAACACATGGAAATTTGCGATCGTTTGCGATCAAACCA
GGAGGAAGCTGATACAAGAATGATTCTTCACACAAAAGACGCAGCTtcaa
atcatgaaaaagtaaTCATTGCAACTCCTGATACAGATGTATTCATCATT
GCAGCTTCGAATCTCAATGCACTTCGCTGCAATTTGTTCATGCTAACTGG
AACTGGTGATAACAGAAGGCTTATTGATCTGAACCTGGCATGTAAAAACT
ACTACTCACAGATCAACAAACCAGATTACACTCAAGAAATGTTCCTCAAA
GCTTTGCCTGGTTTTCATTGCTTCACAGGATGTGATTCGATCAGCGCTTT
CGCCGGACGAGGAAAAATcaaacctttgaaaattttgatacaGAAGAAGG
AGTACGTTGAAGCATTTGGAGAGCTTGGGATGAGCTGGAACATAAGTGAA
GAAACCCAATCAGTTTTGGAAAGTTTTGTCTGCCATATGTATGGAAAGAA
AGATGCCTTGAAACTTGGAATTTCAGTAAACGATCTACGCTACGATATAT
ATTGTCGAAAAAGTGGAAAGGTTTCGTGCGAAGGACTTCCACCATGTCTA
AACGTATTAAGCCAGCACATCAAAAGGGCCAACTATCAAGCGAAGATTTG
GAGGATGTGTCTCAATCCATTAGTTGAAAGATGTGATCCTTCGGAACATG
GTTGGGGAATCGACGATGGTGGTTTGTTTGTCAAGTGGATGACTTGCAAT
CCTGCATTGGACGAGgTACTCTCACTTGTTACGTGCGATTGCAAAAAGTC
ATGTGGAGCGACTTGTCCGTGTGTGATGAACAAGATGGAATGCAGTGATG
CGTGTGGATGTGGTGATTGTGGAAATCGAGACGAAGACGACCAGGAAAGC
GAAGACTTCGAAAGTGACGAAGAAAGTGATCTTgaggaaaattgattttt
gaatatATGACAACTATTCAGCGATTTAGAACAATAATTTGATTCTCTAA
TGTAGTGTATTGAGAATGACAATGCGAATAAGTATCTCGAGTGATTATCA
GAGAGATCATCTACTGGGGTTAGTCTGACcataaatttattattttggta
tcaactgaaatttcattttgatgaaaaattatccATTTATTGATATTTGN
ATAAGTATCTCGAGTCGAGATCAGAGAGATCATCTACTGGGGTTAGTCTG
ACcataaatttattattttggtatcaactgaaatttcattttgatgaaaa
attatccATTTATTGATATTTGATAATATGATTGACTCTTTGCTCTTCTT
TAAATTTGCATTTAAAGGGTCCTTTGAAGCCTTCCCTTTAATTTTTACAA
TAATATTTTGTCACTCTATTTAGGTTTTTTATGTCAATAGTCTCTACCTT
TTGACATAggactaaaatttgattttcgttGATTTGGCGCGCCATACAGC
ATTTAAAGAAAGGTCACTTTggttatttctttttcaatttactGTATATT
CATAGTATCCATGAATTATACATTCGTTTTAACCCATAGCCCATTTTTCT
CCATGAGGTTTAAAATTGGTC Run BLAST on NCBI protein sequence of TCONS_00042146-protein >TCONS_00042146-protein ID=TCONS_00042146-protein|Name=TCONS_00042146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp
KMLSVKEIGKELMITFNKERLEEGHTLSIFDRMKKQKLPTFSNIAMSKAA
KHKARLVAIESTKELFAKIAIIAQSRVIDLKQLLSFPLIELPLSLSEPDG
TLKKTAKSRLLHAVEGETTPVEMLQGDHAFVVDGMAYVRQLKSGGLTFDQ
FSTKLLKSIVSATPSASRIDVVFDVYFETSIKDVERQRRSTGEMTVKQIV
SSAPIKQWGQLLSSGEFKNKLITYFLNDWKSKRHLLGDKILYVNDSTETW
KLTKQHMEICDRLRSNQEEADTRMILHTKDAASNHEKVIIATPDTDVFII
AASNLNALRCNLFMLTGTGDNRRLIDLNLACKNYYSQINKPDYTQEMFLK
ALPGFHCFTGCDSISAFAGRGKIKPLKILIQKKEYVEAFGELGMSWNISE
ETQSVLESFVCHMYGKKDALKLGISVNDLRYDIYCRKSGKVSCEGLPPCL
NVLSQHIKRANYQAKIWRMCLNPLVERCDPSEHGWGIDDGGLFVKWMTCN
PALDEVLSLVTCDCKKSCGATCPCVMNKMECSDACGCGDCGNRDEDDQES
EDFESDEESDLEEN Run BLAST on NCBI transcript from alignment at sc0003233:6548..9044- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042146 ID=TCONS_00042146|Name=TCONS_00042146|organism=Clytia hemisphaerica|type=transcript|length=2497bp|location=Sequence derived from alignment at sc0003233:6548..9044- (Clytia hemisphaerica)
AAAATGCTTTCAGTTAAAGAGATAGGTAAAGAGCTCATGATTACCTTCAA
CAAGGAGCGTCTGGAAGAAGGCCATACTTTATCAATCTTTGATCGCATGA
AGAAACAAAAATTACCCACTTTTTCCAATATTGCGATGTCAAAAGCAGCA
AAGCACAAGGCAAGATTAGTGGCTATTGAAAGTACGAAAGAGTTGTTTGC
AAAAATTGCTATCATCGCTCAATCTAGAGTCATCGATCTAAAACAACTCC
TCTCATTTCCCCTGATTGAGCTACCTCTGTCATTGTCAGAACCGGATGGT
ACCTTGAAGAAAACAGCCAAGTCACGACTATTACACGCGGTCGAGGGGGA
AACCACTCCAGTTGAAATGCTACAAGGAGATCACGCATTTGTCGTTGATG
GAATGGCATATGTTCGGCAGCTCAAGTCTGGTGGGTTGACTTTCGACCAG
TTCTCCACAAAGCTCTTGAAGTCAATCGTCAGCGCTACGCCATCGGCATC
TAGAATCGACGTCGTTTTTGATGTTTACTTCGAAACTTCAATCAAAGATG
TTGAACGCCAAAGGAGATCAACTGGTGAGATGACAGTCAAACAAATAGTC
TCGTCAGCACCGATCAAACAATGGGGTCAACTTCTTTCATCAGGAGAATT
CAAGAATAAGCTAATCACATACTTCCTGAACGATTGGAAAAGTAAAAGGC
ATCTGTTGGGTGACAAGATTCTCTATGTAAATGACTCCACTGAAACCTGG
AAACTAACCAAACAACACATGGAAATTTGCGATCGTTTGCGATCAAACCA
GGAGGAAGCTGATACAAGAATGATTCTTCACACAAAAGACGCAGCTTCAA
ATCATGAAAAAGTAATCATTGCAACTCCTGATACAGATGTATTCATCATT
GCAGCTTCGAATCTCAATGCACTTCGCTGCAATTTGTTCATGCTAACTGG
AACTGGTGATAACAGAAGGCTTATTGATCTGAACCTGGCATGTAAAAACT
ACTACTCACAGATCAACAAACCAGATTACACTCAAGAAATGTTCCTCAAA
GCTTTGCCTGGTTTTCATTGCTTCACAGGATGTGATTCGATCAGCGCTTT
CGCCGGACGAGGAAAAATCAAACCTTTGAAAATTTTGATACAGAAGAAGG
AGTACGTTGAAGCATTTGGAGAGCTTGGGATGAGCTGGAACATAAGTGAA
GAAACCCAATCAGTTTTGGAAAGTTTTGTCTGCCATATGTATGGAAAGAA
AGATGCCTTGAAACTTGGAATTTCAGTAAACGATCTACGCTACGATATAT
ATTGTCGAAAAAGTGGAAAGGTTTCGTGCGAAGGACTTCCACCATGTCTA
AACGTATTAAGCCAGCACATCAAAAGGGCCAACTATCAAGCGAAGATTTG
GAGGATGTGTCTCAATCCATTAGTTGAAAGATGTGATCCTTCGGAACATG
GTTGGGGAATCGACGATGGTGGTTTGTTTGTCAAGTGGATGACTTGCAAT
CCTGCATTGGACGAGGTGAATATAAGATGATCATACTTTATCGTGTCTAG
ATCTAATCTAAAAGACTTCCTTTGAAAATGTTAGCCTCGAAATGATAGAA
AACTATTTAGGGTTTAGAAAACTGAAAAGCCGCGCTCAAGTCTTAGAGAA
ACTCGTAGAGTACTCATCTAAAAATTTAATTAAATTTTTAGGTACTCTCA
CTTGTTACGTGCGATTGCAAAAAGTCATGTGGAGCGACTTGTCCGTGTGT
GATGAACAAGATGGAATGCAGTGATGCGTGTGGATGTGGTGATTGTGGAA
ATCGAGACGAAGACGACCAGGAAAGCGAAGACTTCGAAAGTGACGAAGAA
AGTGATCTTGAGGAAAATTGATTTTTGAATATATGACAACTATTCAGCGA
TTTAGAACAATAATTTGATTCTCTAATGTAGTGTATTGAGAATGACAATG
CGAATAAGTATCTCGAGTGATTATCAGAGAGATCATCTACTGGGGTTAGT
CTGACCATAAATTTATTATTTTGGTATCAACTGAAATTTCATTTTGATGA
AAAATTATCCATTTATTGATATTTGNATAAGTATCTCGAGTCGAGATCAG
AGAGATCATCTACTGGGGTTAGTCTGACCATAAATTTATTATTTTGGTAT
CAACTGAAATTTCATTTTGATGAAAAATTATCCATTTATTGATATTTGAT
AATATGATTGACTCTTTGCTCTTCTTTAAATTTGCATTTAAAGGGTCCTT
TGAAGCCTTCCCTTTAATTTTTACAATAATATTTTGTCACTCTATTTAGG
TTTTTTATGTCAATAGTCTCTACCTTTTGACATAGGACTAAAATTTGATT
TTCGTTGATTTGGCGCGCCATACAGCATTTAAAGAAAGGTCACTTTGGTT
ATTTCTTTTTCAATTTACTGTATATTCATAGTATCCATGAATTATACATT
CGTTTTAACCCATAGCCCATTTTTCTCCATGAGGTTTAAAATTGGTC Coding sequence (CDS) from alignment at sc0003233:6548..9044- >TCONS_00042146 ID=TCONS_00042146|Name=TCONS_00042146|organism=Clytia hemisphaerica|type=CDS|length=3390bp|location=Sequence derived from alignment at sc0003233:6548..9044- (Clytia hemisphaerica)
GTACTCTCACTTGTTACGTGCGATTGCAAAAAGTCATGTGGAGCGACTTG
TCCGTGTGTGATGAACAAGATGGAATGCAGTGATGCGTGTGGATGTGGTG
ATTGTGGAAATCGAGACGAAGACGACCAGGAAAGCGAAGACTTCGAAAGT
GACGAAGAAAGTGATCTTGAGGAAAATTGAAAAATGCTTTCAGTTAAAGA
GATAGGTAAAGAGCTCATGATTACCTTCAACAAGGAGCGTCTGGAAGAAG
GCCATACTTTATCAATCTTTGATCGCATGAAGAAACAAAAATTACCCACT
TTTTCCAATATTGCGATGTCAAAAGCAGCAAAGCACAAGGCAAGATTAGT
GGCTATTGAAAGTACGAAAGAGTTGTTTGCAAAAATTGCTATCATCGCTC
AATCTAGAGTCATCGATCTAAAACAACTCCTCTCATTTCCCCTGATTGAG
CTACCTCTGTCATTGTCAGAACCGGATGGTACCTTGAAGAAAACAGCCAA
GTCACGACTATTACACGCGGTCGAGGGGGAAACCACTCCAGTTGAAATGC
TACAAGGAGATCACGCATTTGTCGTTGATGGAATGGCATATGTTCGGCAG
CTCAAGTCTGGTGGGTTGACTTTCGACCAGTTCTCCACAAAGCTCTTGAA
GTCAATCGTCAGCGCTACGCCATCGGCATCTAGAATCGACGTCGTTTTTG
ATGTTTACTTCGAAACTTCAATCAAAGATGTTGAACGCCAAAGGAGATCA
ACTGGTGAGATGACAGTCAAACAAATAGTCTCGTCAGCACCGATCAAACA
ATGGGGTCAACTTCTTTCATCAGGAGAATTCAAGAATAAGCTAATCACAT
ACTTCCTGAACGATTGGAAAAGTAAAAGGCATCTGTTGGGTGACAAGATT
CTCTATGTAAATGACTCCACTGAAACCTGGAAACTAACCAAACAACACAT
GGAAATTTGCGATCGTTTGCGATCAAACCAGGAGGAAGCTGATACAAGAA
TGATTCTTCACACAAAAGACGCAGCTTCAAATCATGAAAAAGTAATCATT
GCAACTCCTGATACAGATGTATTCATCATTGCAGCTTCGAATCTCAATGC
ACTTCGCTGCAATTTGTTCATGCTAACTGGAACTGGTGATAACAGAAGGC
TTATTGATCTGAACCTGGCATGTAAAAACTACTACTCACAGATCAACAAA
CCAGATTACACTCAAGAAATGTTCCTCAAAGCTTTGCCTGGTTTTCATTG
CTTCACAGGATGTGATTCGATCAGCGCTTTCGCCGGACGAGGAAAAATCA
AACCTTTGAAAATTTTGATACAGAAGAAGGAGTACGTTGAAGCATTTGGA
GAGCTTGGGATGAGCTGGAACATAAGTGAAGAAACCCAATCAGTTTTGGA
AAGTTTTGTCTGCCATATGTATGGAAAGAAAGATGCCTTGAAACTTGGAA
TTTCAGTAAACGATCTACGCTACGATATATATTGTCGAAAAAGTGGAAAG
GTTTCGTGCGAAGGACTTCCACCATGTCTAAACGTATTAAGCCAGCACAT
CAAAAGGGCCAACTATCAAGCGAAGATTTGGAGGATGTGTCTCAATCCAT
TAGTTGAAAGATGTGATCCTTCGGAACATGGTTGGGGAATCGACGATGGT
GGTTTGTTTGTCAAGTGGATGACTTGCAATCCTGCATTGGACGAGGTACT
CTCACTTGTTACGTGCGATTGCAAAAAGTCATGTGGAGCGACTTGTCCGT
GTGTGATGAACAAGATGGAATGCAGTGATGCGTGTGGATGTGGTGATTGT
GGAAATCGAGACGAAGACGACCAGGAAAGCGAAGACTTCGAAAGTGACGA
AGAAAGTGATCTTGAGGAAAATTGAAAAATGCTTTCAGTTAAAGAGATAG
GTAAAGAGCTCATGATTACCTTCAACAAGGAGCGTCTGGAAGAAGGCCAT
ACTTTATCAATCTTTGATCGCATGAAGAAACAAAAATTACCCACTTTTTC
CAATATTGCGATGTCAAAAGCAGCAAAGCACAAGGCAAGATTAGTGGCTA
TTGAAAGTACGAAAGAGTTGTTTGCAAAAATTGCTATCATCGCTCAATCT
AGAGTCATCGATCTAAAACAACTCCTCTCATTTCCCCTGATTGAGCTACC
TCTGTCATTGTCAGAACCGGATGGTACCTTGAAGAAAACAGCCAAGTCAC
GACTATTACACGCGGTCGAGGGGGAAACCACTCCAGTTGAAATGCTACAA
GGAGATCACGCATTTGTCGTTGATGGAATGGCATATGTTCGGCAGCTCAA
GTCTGGTGGGTTGACTTTCGACCAGTTCTCCACAAAGCTCTTGAAGTCAA
TCGTCAGCGCTACGCCATCGGCATCTAGAATCGACGTCGTTTTTGATGTT
TACTTCGAAACTTCAATCAAAGATGTTGAACGCCAAAGGAGATCAACTGG
TGAGATGACAGTCAAACAAATAGTCTCGTCAGCACCGATCAAACAATGGG
GTCAACTTCTTTCATCAGGAGAATTCAAGAATAAGCTAATCACATACTTC
CTGAACGATTGGAAAAGTAAAAGGCATCTGTTGGGTGACAAGATTCTCTA
TGTAAATGACTCCACTGAAACCTGGAAACTAACCAAACAACACATGGAAA
TTTGCGATCGTTTGCGATCAAACCAGGAGGAAGCTGATACAAGAATGATT
CTTCACACAAAAGACGCAGCTTCAAATCATGAAAAAGTAATCATTGCAAC
TCCTGATACAGATGTATTCATCATTGCAGCTTCGAATCTCAATGCACTTC
GCTGCAATTTGTTCATGCTAACTGGAACTGGTGATAACAGAAGGCTTATT
GATCTGAACCTGGCATGTAAAAACTACTACTCACAGATCAACAAACCAGA
TTACACTCAAGAAATGTTCCTCAAAGCTTTGCCTGGTTTTCATTGCTTCA
CAGGATGTGATTCGATCAGCGCTTTCGCCGGACGAGGAAAAATCAAACCT
TTGAAAATTTTGATACAGAAGAAGGAGTACGTTGAAGCATTTGGAGAGCT
TGGGATGAGCTGGAACATAAGTGAAGAAACCCAATCAGTTTTGGAAAGTT
TTGTCTGCCATATGTATGGAAAGAAAGATGCCTTGAAACTTGGAATTTCA
GTAAACGATCTACGCTACGATATATATTGTCGAAAAAGTGGAAAGGTTTC
GTGCGAAGGACTTCCACCATGTCTAAACGTATTAAGCCAGCACATCAAAA
GGGCCAACTATCAAGCGAAGATTTGGAGGATGTGTCTCAATCCATTAGTT
GAAAGATGTGATCCTTCGGAACATGGTTGGGGAATCGACGATGGTGGTTT
GTTTGTCAAGTGGATGACTTGCAATCCTGCATTGGACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042146-exon-sc0003233-1575043694:7530..9044 | TCONS_00042146-exon-sc0003233-1575043694:7530..9044 | Clytia hemisphaerica | exon |
| TCONS_00042146-exon-sc0003233-1575043694:6548..7353 | TCONS_00042146-exon-sc0003233-1575043694:6548..7353 | Clytia hemisphaerica | exon |
| TCONS_00042146-exon-sc0003233-1510915933:7530..9044 | TCONS_00042146-exon-sc0003233-1510915933:7530..9044 | Clytia hemisphaerica | exon |
| TCONS_00042146-exon-sc0003233-1510915933:6548..7353 | TCONS_00042146-exon-sc0003233-1510915933:6548..7353 | Clytia hemisphaerica | exon |
| TCONS_00042146-exon-sc0003233-1491911889:7530..9044 | TCONS_00042146-exon-sc0003233-1491911889:7530..9044 | Clytia hemisphaerica | exon |
| TCONS_00042146-exon-sc0003233-1491911889:6548..7353 | TCONS_00042146-exon-sc0003233-1491911889:6548..7353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003233 | supercontig | sc0003233:6548..9044 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR033467 | Tesmin/TSO1-like_CXC |
Blast
The following BLAST results are available for this feature:
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