TCONS_00042145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042145
Unique NameTCONS_00042145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042145 ID=TCONS_00042145|Name=TCONS_00042145|organism=Clytia hemisphaerica|type=transcript|length=390bp
NNATAATCGTAATATCCATAATCAAAAGAACAAATGAATAAGGTGGACTA
AAGTCACAGTTCAAACGACTCAATATCGATCATTGGAATTCCACCAGAAT
CTTCTACGATAAAGAGGGATATTACGACTATCCAAAATTCTATCATACAA
AAAGAAACTGCTAAAACCAAACACACCCTATTAAAAGAATcccaaaaaat
aaagataaaacgaGACTTCACCCATGAAAATTGACGTATTTACAAAACTC
CATGGTGAAATTCATTAGCTTAGTCGGCAGTACGGTTTTGATCTATTGTC
CATTGATACACTGCGAAAATCCAAATATTCCAAATAATTTTCCTGGAGAG
CTTGATCGACCAGTTTAACGTTCGTTACTGAAATTGAANN
Run BLAST on NCBI

transcript from alignment at sc0003229:9110..9499

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042145 ID=TCONS_00042145|Name=TCONS_00042145|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at sc0003229:9110..9499 (Clytia hemisphaerica)
NNTTCAATTTCAGTAACGAACGTTAAACTGGTCGATCAAGCTCTCCAGGA
AAATTATTTGGAATATTTGGATTTTCGCAGTGTATCAATGGACAATAGAT
CAAAACCGTACTGCCGACTAAGCTAATGAATTTCACCATGGAGTTTTGTA
AATACGTCAATTTTCATGGGTGAAGTCtcgttttatctttattttttggg
ATTCTTTTAATAGGGTGTGTTTGGTTTTAGCAGTTTCTTTTTGTATGATA
GAATTTTGGATAGTCGTAATATCCCTCTTTATCGTAGAAGATTCTGGTGG
AATTCCAATGATCGATATTGAGTCGTTTGAACTGTGACTTTAGTCCACCT
TATTCATTTGTTCTTTTGATTATGGATATTACGATTATNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026018XLOC_026018Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042145-exon-sc0003229-1491911889:9110..9499TCONS_00042145-exon-sc0003229-1491911889:9110..9499Clytia hemisphaericaexon
TCONS_00042145-exon-sc0003229-1510915933:9110..9499TCONS_00042145-exon-sc0003229-1510915933:9110..9499Clytia hemisphaericaexon
TCONS_00042145-exon-sc0003229-1575043694:9110..9499TCONS_00042145-exon-sc0003229-1575043694:9110..9499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003229supercontigsc0003229:9110..9499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.505742	0.266819	0.0285751	0	7.36061	5.81255	7.56172	5.73107	18.1927	13.9447	8.87483	8.83122	0.999695	1.42265	0.370591	0.184282	2.60127	2.07261	0.208363	1.18801	1.37635	1.11187	0.934263	0	0.389444	0	0.794213	0.573673	0.573347	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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