TCONS_00042143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042143
Unique NameTCONS_00042143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042143 ID=TCONS_00042143|Name=TCONS_00042143|organism=Clytia hemisphaerica|type=transcript|length=254bp
ATGGAGGGGAGttttttttgatagaataaatttgaaataagtttcatttt
taccattaatttttattttgctctTTAGATTAGATAATATTACCGTAAAA
AATTTAGCAAATAACTATTATGGAAACAAAGAAAGACGCCAAAACGACAT
CATTGGCTCGCAATATCTTGGttggaaaaagaaatttggtTGTATCGATA
TTTTCAGTTCCTTGATGAGAATTATACAAATTACTAGCTAATTATCAAAT
TACT
Run BLAST on NCBI

transcript from alignment at sc0003229:5641..5894

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042143 ID=TCONS_00042143|Name=TCONS_00042143|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at sc0003229:5641..5894 (Clytia hemisphaerica)
AGTAATTTGATAATTAGCTAGTAATTTGTATAATTCTCATCAAGGAACTG
AAAATATCGATACAaccaaatttctttttccaaCCAAGATATTGCGAGCC
AATGATGTCGTTTTGGCGTCTTTCTTTGTTTCCATAATAGTTATTTGCTA
AATTTTTTACGGTAATATTATCTAATCTAAagagcaaaataaaaattaat
ggtaaaaatgaaacttatttcaaatttattctatcaaaaaaaaCTCCCCT
CCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026016XLOC_026016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042143-exon-sc0003229-1491911889:5641..5894TCONS_00042143-exon-sc0003229-1491911889:5641..5894Clytia hemisphaericaexon
TCONS_00042143-exon-sc0003229-1510915933:5641..5894TCONS_00042143-exon-sc0003229-1510915933:5641..5894Clytia hemisphaericaexon
TCONS_00042143-exon-sc0003229-1575043694:5641..5894TCONS_00042143-exon-sc0003229-1575043694:5641..5894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003229supercontigsc0003229:5641..5894 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.719947	2.10619	0	0	109.22	68.1497	37.42	44.9664	6.54408	6.01183	4.37642	11.7754	1.68993	0.497253	0.54605	0.438716	1.08092	0	3.67632	1.2478	2.78434	4.07432	0	1.50096	0	0.689862	0	2.10711	1.2075	1.62828
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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