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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042140 ID=TCONS_00042140|Name=TCONS_00042140|organism=Clytia hemisphaerica|type=transcript|length=1023bp
CAATTAAGACCATCATGGGTTTGTTTCCAAATTAGACCTTATTGTATCTC
AATCGAGACCATTGTGACGTTCGTAAGAGACCCTGTAAGGTGTTATAATT
CAAACCTTTTAAGGTCTTGATTATGACAAGACCATTAAGGTGTTCGTAAG
AGACCATTTTAGGCATGATGATTTAAACCTTTTGAGGTCTTGATTGCAAC
AAGACCATTAAGATGCTCGAAAGAAACCATTCGGATGTTCAAAAGAGAGC
TTTGAAAGACTCATATCGGAGTCCTTTATCGCAGAACCTATAAGGTCTCA
TTATAATTTAGACCTTTTCAAGTCTTGATTCTAAATCTGTACGCATAGAA
AATGTTATCAAATGACTTGTTTTATATTTCAggattacaaagtaaacaaa
agctGGAAGATTATGTATAGTGTTGAAATAGAATTTTCGTTTTTGAAATT
AATAGAAACTATATATAGTCGAAGttataatttataatattatGACAGTA
TATACTCTTATAAATGAATAATTACATTACAATTAATATAATACATATAG
TACATATTAAGTTAGGAGCCTTGACAAATATTCAAGTCTTGGAATACGTT
CTTCTCTTCTGCCTGTAGCTTTAGAAGGAATTTTCAATCATAATAgattt
ggtattgttggaaagataattaaaATAGTGCTTTAATCATCATTTTCGCC
GTAGTAATTCTAACAATAATAAAATTATTATGATTGAAAATTTCCCTAAA
AGTTTATAAGCATGAGAAAGAAAACTGAACCCTTATCGTAAACAGACTTA
ACAGACTCaattttgaaagaagaaagcTTTGTTTTTCTATAAGTCCATTC
TCTATTTTGCAGCTCATAGACACACAAGTTTTTAAACGATttcaggaaaa
aaaataaaatagacaTAATAGAATAGTATTTGATAGAAAAGTATAtaatt
tcattcattatataATATGTTAGAATATACAGAATTATTagataaaataa
tttgaatcaatAAAAGTGCTCTT Run BLAST on NCBI transcript from alignment at sc0003226:1100..2122 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042140 ID=TCONS_00042140|Name=TCONS_00042140|organism=Clytia hemisphaerica|type=transcript|length=1023bp|location=Sequence derived from alignment at sc0003226:1100..2122 (Clytia hemisphaerica)
AAGAGCACTTTTattgattcaaattattttatctAATAATTCTGTATATT
CTAACATATtatataatgaatgaaattaTATACTTTTCTATCAAATACTA
TTCTATTAtgtctattttattttttttcctgaaATCGTTTAAAAACTTGT
GTGTCTATGAGCTGCAAAATAGAGAATGGACTTATAGAAAAACAAAgctt
tcttctttcaaaattGAGTCTGTTAAGTCTGTTTACGATAAGGGTTCAGT
TTTCTTTCTCATGCTTATAAACTTTTAGGGAAATTTTCAATCATAATAAT
TTTATTATTGTTAGAATTACTACGGCGAAAATGATGATTAAAGCACTATt
ttaattatctttccaacaataccaaatcTATTATGATTGAAAATTCCTTC
TAAAGCTACAGGCAGAAGAGAAGAACGTATTCCAAGACTTGAATATTTGT
CAAGGCTCCTAACTTAATATGTACTATATGTATTATATTAATTGTAATGT
AATTATTCATTTATAAGAGTATATACTGTCataatattataaattataaC
TTCGACTATATATAGTTTCTATTAATTTCAAAAACGAAAATTCTATTTCA
ACACTATACATAATCTTCCagcttttgtttactttgtaatccTGAAATAT
AAAACAAGTCATTTGATAACATTTTCTATGCGTACAGATTTAGAATCAAG
ACTTGAAAAGGTCTAAATTATAATGAGACCTTATAGGTTCTGCGATAAAG
GACTCCGATATGAGTCTTTCAAAGCTCTCTTTTGAACATCCGAATGGTTT
CTTTCGAGCATCTTAATGGTCTTGTTGCAATCAAGACCTCAAAAGGTTTA
AATCATCATGCCTAAAATGGTCTCTTACGAACACCTTAATGGTCTTGTCA
TAATCAAGACCTTAAAAGGTTTGAATTATAACACCTTACAGGGTCTCTTA
CGAACGTCACAATGGTCTCGATTGAGATACAATAAGGTCTAATTTGGAAA
CAAACCCATGATGGTCTTAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042140-exon-sc0003226-1491911889:1100..2122 | TCONS_00042140-exon-sc0003226-1491911889:1100..2122 | Clytia hemisphaerica | exon |
| TCONS_00042140-exon-sc0003226-1510915933:1100..2122 | TCONS_00042140-exon-sc0003226-1510915933:1100..2122 | Clytia hemisphaerica | exon |
| TCONS_00042140-exon-sc0003226-1575043694:1100..2122 | TCONS_00042140-exon-sc0003226-1575043694:1100..2122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003226 | supercontig | sc0003226:1100..2122 . |
Blast
The following BLAST results are available for this feature:
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