TCONS_00042137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042137
Unique NameTCONS_00042137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042137 ID=TCONS_00042137|Name=TCONS_00042137|organism=Clytia hemisphaerica|type=transcript|length=412bp
ATCGTCACATTGAAGCTTCTCTACATGTGTAGAAATATGTTGGAGAGTGA
TAAATCGTTTAGCTCCAGAAAATGGGAAGATGCTGAACGTTCCCACTCCG
ACGTGTACGTTGTGGACATGTCCACACAAAACGTTTACCAAATCGTGAGG
AACATGTTCAAGAAGTACCAGAAAGAGGGCGATCCAGATTCTGGGAAGGA
TCGCCATCACAAAAAGTACAATAAACAGCTGAAGGAAGCCCGCAGCTACT
GCTGTGAGATTCGGGATGCGAGGGAGGGAAGAGCGAAAGAGCGAAATTAG
TAACGTGTACatagatttcttttgttgttttgagtATTTTTACTAACTGT
CGTTTTcatatattttactttttctttggttAACGTTGgtagaaaacaaa
ataaagcaGAAG
Run BLAST on NCBI

protein sequence of TCONS_00042137-protein

>TCONS_00042137-protein ID=TCONS_00042137-protein|Name=TCONS_00042137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
IVTLKLLYMCRNMLESDKSFSSRKWEDAERSHSDVYVVDMSTQNVYQIVR
NMFKKYQKEGDPDSGKDRHHKKYNKQLKEARSYCCEIRDAREGRAKERN
Run BLAST on NCBI

transcript from alignment at sc0003225:6768..7179

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042137 ID=TCONS_00042137|Name=TCONS_00042137|organism=Clytia hemisphaerica|type=transcript|length=412bp|location=Sequence derived from alignment at sc0003225:6768..7179 (Clytia hemisphaerica)
CTTCtgctttattttgttttctacCAACGTTaaccaaagaaaaagtaaaa
tatatgAAAACGACAGTTAGTAAAAATactcaaaacaacaaaagaaatct
atGTACACGTTACTAATTTCGCTCTTTCGCTCTTCCCTCCCTCGCATCCC
GAATCTCACAGCAGTAGCTGCGGGCTTCCTTCAGCTGTTTATTGTACTTT
TTGTGATGGCGATCCTTCCCAGAATCTGGATCGCCCTCTTTCTGGTACTT
CTTGAACATGTTCCTCACGATTTGGTAAACGTTTTGTGTGGACATGTCCA
CAACGTACACGTCGGAGTGGGAACGTTCAGCATCTTCCCATTTTCTGGAG
CTAAACGATTTATCACTCTCCAACATATTTCTACACATGTAGAGAAGCTT
CAATGTGACGAT

Coding sequence (CDS) from alignment at sc0003225:6768..7179

>TCONS_00042137 ID=TCONS_00042137|Name=TCONS_00042137|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0003225:6768..7179 (Clytia hemisphaerica)
CTAATTTCGCTCTTTCGCTCTTCCCTCCCTCGCATCCCGAATCTCACAGC
AGTAGCTGCGGGCTTCCTTCAGCTGTTTATTGTACTTTTTGTGATGGCGA
TCCTTCCCAGAATCTGGATCGCCCTCTTTCTGGTACTTCTTGAACATGTT
CCTCACGATTTGGTAAACGTTTTGTGTGGACATGTCCACAACGTACACGT
CGGAGTGGGAACGTTCAGCATCTTCCCATTTTCTGGAGCTAAACGATTTA
TCACTCTCCAACATATTTCTACACATGTAGAGAAGCTTCAATGTGACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026010XLOC_026010Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042137-exon-sc0003225-1491911889:6768..7179TCONS_00042137-exon-sc0003225-1491911889:6768..7179Clytia hemisphaericaexon
TCONS_00042137-exon-sc0003225-1510915933:6768..7179TCONS_00042137-exon-sc0003225-1510915933:6768..7179Clytia hemisphaericaexon
TCONS_00042137-exon-sc0003225-1575043694:6768..7179TCONS_00042137-exon-sc0003225-1575043694:6768..7179Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042137-proteinTCONS_00042137-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003225supercontigsc0003225:6768..7179 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174767	0.511277	0	0	0.70705	0.55872	0.898763	0.841411	0	0.182421	0.354125	0.116394	0.116232	0.603541	1.19086	1.38448	1.44317	2.42051	0.371563	0.388814	1.68975	1.2363	0.601154	0.546536	0.18764	0.502392	1.43784	0	0.193978	0.395266
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009076FRB_dom
Vocabulary: Molecular Function
TermDefinition
GO:0044877macromolecular complex binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0044877 macromolecular complex binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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