TCONS_00042135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042135
Unique NameTCONS_00042135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length716

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042135 ID=TCONS_00042135|Name=TCONS_00042135|organism=Clytia hemisphaerica|type=transcript|length=716bp
GtcttttctatgtttgtttACTACGATTTGATTGGCTCTCGCATCTTTTT
CTCCGCGCGTGATTGGTCAAAAGAACAATTGAATGAATATTgcatcagaa
ttttttttcacgtgGGCAAAATGTGCGCGCCTTTTCATTTGGAAATTGGA
TCTTGACGAAGTACCATCAAATTATCGAAATGGAAAGTCGAAGAAGAAAC
AACATTCATTATGTTTCCTTCAACAATCGTTCGAGTGCTTCAGAGCATGA
AATTATGATGGATCGTCgcaaaaaaagaggaaaagacgTATTTAATGCTG
AGCACATATTTGGAGAGAAAAAGGTCAGTGTTTTTCTTCTGACTATGAAT
TCTGTAGTGTTTCAAAAACTCTGTCTTAAATTGGCTCACACTACACTAAT
CAGACAGATGGGTGAAGATTTAAGGCATGACTCTGAGAACATAAATCTGC
AATATTTGTGGGTTTTAAGGCAATTACCTAATGGAAACTATTCATAGAGT
TCTGGAGGATGTATTTATTGACTTTTCTTGAATTCTTGCTAACTCTTGAG
CCTTTTCCCTGATTATGTAGATTGGAAAGTCTTCTTATTATTTGGTGAAG
TGGGCTGGTTGGGGAACTGAAGACTGCACTTGGGAGCCACGAGAAAATCT
GCTGGATGATCGGCTACTGCAGTAAGTTAAGATATATACAGTTCTTTTGT
TAATGTTGTCAAGTAT
Run BLAST on NCBI

transcript from alignment at sc0003225:694..1409

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042135 ID=TCONS_00042135|Name=TCONS_00042135|organism=Clytia hemisphaerica|type=transcript|length=716bp|location=Sequence derived from alignment at sc0003225:694..1409 (Clytia hemisphaerica)
ATACTTGACAACATTAACAAAAGAACTGTATATATCTTAACTTACTGCAG
TAGCCGATCATCCAGCAGATTTTCTCGTGGCTCCCAAGTGCAGTCTTCAG
TTCCCCAACCAGCCCACTTCACCAAATAATAAGAAGACTTTCCAATCTAC
ATAATCAGGGAAAAGGCTCAAGAGTTAGCAAGAATTCAAGAAAAGTCAAT
AAATACATCCTCCAGAACTCTATGAATAGTTTCCATTAGGTAATTGCCTT
AAAACCCACAAATATTGCAGATTTATGTTCTCAGAGTCATGCCTTAAATC
TTCACCCATCTGTCTGATTAGTGTAGTGTGAGCCAATTTAAGACAGAGTT
TTTGAAACACTACAGAATTCATAGTCAGAAGAAAAACACTGACCTTTTTC
TCTCCAAATATGTGCTCAGCATTAAATAcgtcttttcctctttttttgcG
ACGATCCATCATAATTTCATGCTCTGAAGCACTCGAACGATTGTTGAAGG
AAACATAATGAATGTTGTTTCTTCTTCGACTTTCCATTTCGATAATTTGA
TGGTACTTCGTCAAGATCCAATTTCCAAATGAAAAGGCGCGCACATTTTG
CCcacgtgaaaaaaaattctgatgcAATATTCATTCAATTGTTCTTTTGA
CCAATCACGCGCGGAGAAAAAGATGCGAGAGCCAATCAAATCGTAGTaaa
caaacatagaaaagaC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026008XLOC_026008Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042135-exon-sc0003225-1491911889:694..1409TCONS_00042135-exon-sc0003225-1491911889:694..1409Clytia hemisphaericaexon
TCONS_00042135-exon-sc0003225-1510915933:694..1409TCONS_00042135-exon-sc0003225-1510915933:694..1409Clytia hemisphaericaexon
TCONS_00042135-exon-sc0003225-1575043694:694..1409TCONS_00042135-exon-sc0003225-1575043694:694..1409Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003225supercontigsc0003225:694..1409 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0775144	0.283099	0.596556	0.089965	0.0842241	0.0589673	0.292162	0	0	0.0465387	0.0483309	0.0397346	0.0852826	0	0	0	0	0	0	0	0	0.37565	0.469362	0.0959507	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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