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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042134 ID=TCONS_00042134|Name=TCONS_00042134|organism=Clytia hemisphaerica|type=transcript|length=1654bp
ATAATAATGAAATATAATTAGCAAAAggggtgaaaaaattatttccccCA
AAAAGACAAACAGTACCTGTGTTTTCGTTTTTCGGGAAGAAGAGCTGTGA
AGTCTTGATGGAAAATGATAATCGAAGACATTGAagaatcaaaaataatt
ttctggaaAGAGATTCTGAACAATTTGAAACGATTCATCGCTTTTTCAAT
AGCTGCATTAGCTATCTCACTTGTATCATCAATCATCCTTTTCTTCGTTG
AAGAATGTTATTTTCATGTTCCCGAACAATGTCCAGCCGACTACCAACAA
TCTTTCGAACTTTGTCAAAATGTTGGTACAATGAACCAGACGACATTTGT
GAATGACACAGAAGCTTTTGAACTTTATATCAATGTCACTAAATTTTGCC
ACAATCGTGAATGCAAAATTGACAAATATTCGCAGAAAAGCTGCACCATT
gatcataaaaagtttttcaaatggATGACTTTTATGCTGACAACTACTTT
TACCATCGGTTATGGTAACATTGTTCCGAAATCCACTCCTGGCAGAGGAT
TGACAATATTGATAGCAATTATTGGTATTCCAATGGCGTCAGCGACTGTT
CTGTTTTTTGGCAAAGCAATTAACAACACTATCAAATATCTCATCGTATG
CTTTGAAAACACTTGcttgaaacatgaaaaaattgTATGGTTTAAACGTA
AATTTGCGCTTATTCATTTTCTCTTAACTTTCACCACAGTAGGAACACAA
GCATTATTCTATAAATTCACAGCGATGAGCCATTACAGCTATTTCGATCT
CATTTATTTCACATGTATATCAATGCTGACAATAGGTTTCGGTGATATAA
CTCCAAATCTACAGTATTATTATCAACTCGATATTCTTATGTTGGTTTTG
ATAACGACTGTGGAGCTGGTCTTCTTTTTCTGGTCTTTTTCGTTGATCGG
ATCCATTATTGATTTTCTGACATCTTTTGAAAGTGATTTTGCATCGCAAC
AGAACCATCATCACCAGAAAAAACGTGAAAACAATGTTGTTGATGTTCCT
GATGAGAATTTGAAATGTCATGTCGAAATAAACCGTAACACTTTAGATGA
TAAGGCACCAAATATTGTTTAACTTTGAGAAACTACCGAATAACACCCCT
CGGGGCTTGATGGTCCAGATCataaaaaatactttcaaacaGTAACCCCA
AACTAACTGTGAGGGGTGCGAGGAGGGCAtatgtttatatattttacaga
ccagaacagaTGAAATCCTTTTTCTCcataaaaattttattcaaaaactt
ttcttttgttttaaatggtcCACCCTATCTCAgatgaatttatttttcat
tcaatacTGGATAATGTTGTAAGATTGCAGATTCACTCAACAATATTCAT
CAAGAAGTTAATTTTGACCTTcgtatttttttctctcaacaATATTGACC
ATATTCCATATTCTCAAGCATCTTTTCAACCAGCAAATACCCCATTTTTT
ATTGAACTGAAGATCACTAGAATGGctgtttgaaaattaatttttacatc
aaaaaaaaagatattaggaaaaaagcaaaaaatgctgacgtcagcaaaag
cttgtttcttgaataactccagtttggccgatgatataaacatgaaattt
ggac Run BLAST on NCBI protein sequence of TCONS_00042134-protein >TCONS_00042134-protein ID=TCONS_00042134-protein|Name=TCONS_00042134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MIIEDIEESKIIFWKEILNNLKRFIAFSIAALAISLVSSIILFFVEECYF
HVPEQCPADYQQSFELCQNVGTMNQTTFVNDTEAFELYINVTKFCHNREC
KIDKYSQKSCTIDHKKFFKWMTFMLTTTFTIGYGNIVPKSTPGRGLTILI
AIIGIPMASATVLFFGKAINNTIKYLIVCFENTCLKHEKIVWFKRKFALI
HFLLTFTTVGTQALFYKFTAMSHYSYFDLIYFTCISMLTIGFGDITPNLQ
YYYQLDILMLVLITTVELVFFFWSFSLIGSIIDFLTSFESDFASQQNHHH
QKKRENNVVDVPDENLKCHVEINRNTLDDKAPNIV Run BLAST on NCBI transcript from alignment at sc0003224:10328..13127- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042134 ID=TCONS_00042134|Name=TCONS_00042134|organism=Clytia hemisphaerica|type=transcript|length=2800bp|location=Sequence derived from alignment at sc0003224:10328..13127- (Clytia hemisphaerica)
ATAATAATGAAATATAATTAGCAAAAGGGGTGAAAAAATTATTTCCCCCA
AAAAGACAAACAGTACCTGTGTTTTCGTTTTTCGGGAAGAAGAGCTGTGA
AGTCTTGATGGAAAATGATAATCGAAGACATTGAAGAATCAAAAATAATT
TTCTGGAAAGAGATTCTGAACAATTTGAAACGATTCATCGCTTTTTCAAT
AGCTGCATTAGCTATCTCACTTGTATCATCAATCATCCTTTTCTTCGTTG
AAGAATGTTATTTTCATGTTCCCGAACAATGTCCAGCCGACTACCAACAA
TCTTTCGAACTTTGTCAAAATGTTGGTACAATGAACCAGACGACATTTGT
GAATGACACAGAAGCTTTTGAACTTTATATCAATGTCACTAAATTTTGCC
ACAATCGTGAATGCAAAATTGACAAATATTCGCAGAAAAGCTGCACCATT
GATCATAAAAAGTTTTTCAAATGGATGACTTTTATGCTGACAACTACTTT
TACCATCGGTAACCTATTTTATTTTTCTTATCAGTCTTATGCTTTTGTAT
TAGATTTTCTTGTCGTGAGACAGACTACTCCACATATTTATTTGGTCATA
TCTCGAATAAGATTTTCGATAGATAGCAAGGGTCATTTTCAAAGTCATTT
TCCCTCAAATTCCGCCACATATTCTGGACCAGAACAAAATATACAGTGCC
GTCAAAAATTTCTTTAGAAATCAATATTTCCGGCAGAATTTCCGACAATT
TGAACTATTTTTCTAAATTCTTTTCCTGAGTAAATGGGTCAATTTGAAAT
TCCGTCGAAATTTTCTACGAACTCGGCAACCCAGTCCGAAGTGGGTAAAT
CCCACACCTGCATCAACCGTGAACTCCCGTATTCATGATATGCACCATTG
CAATGTCTTCCACGGACCCAATGGCTGATTGGTTGAAAGTGACGTATTGA
CTGATTTTACGTCACTCACAACCAATCAGCTATTGGGTCCGTGGTGTAAT
GTAAGAAGACATTACAATGGTGCACATCATGAATAGAACCAGAACAACTC
CCTCTCTAATTGGAATCTTTTTGTAACTCAAATAGATTATTGGTCTCCTC
AATGGGAAAGTGGTTTAAATATAATCTCGGTCAAAATATATTGAGAATTT
TGATTAATTCCTCGTTTTTTAGCAATTTAAAGTTCGACCGAGAAACTTGG
GTGCCAATTTTTTTTCGGACACTTTGGTGTGATTTCCGGACAAATATGAC
AGCCTCAGGCAAAAATCATAAGGTGAAAAATTAATGAAAATTCTAGCTTG
AGAAAACGGAACGTTGTATATTTTTGGAAAGCTCTCAAAAAATTAAGTTT
ATAGATATATTGCAAGTATAGGTGATTTCTGTACCTAACTCGAGATAGAG
CTTTCCAAAAATATACAAGAGGTCTCTTTTTTCTTAAGCTAAAATTTTCA
TTAATTTTTGACCCTATAATTTTAGCCTGAGACCGTCATATTTGTCTGAG
AATCACACCAAAGGGTGTCCGAAAAAAAGTTGGTACCCAAGTTATTTTGA
TTCCACTACCCCTTAAAGTGCTTTGACTAAAAAAATCAAGCGATTTTACT
ATAAAGAAAATTTCCTAACGTTAGGAATAACTTGATAAATGATCTTAATT
TCAGGTTATGGTAACATTGTTCCGAAATCCACTCCTGGCAGAGGATTGAC
AATATTGATAGCAATTATTGGTATTCCAATGGCGTCAGCGACTGTTCTGT
TTTTTGGCAAAGCAATTAACAACACTATCAAATATCTCATCGTATGCTTT
GAAAACACTTGCTTGAAACATGAAAAAATTGTATGGTTTAAACGTAAATT
TGCGCTTATTCATTTTCTCTTAACTTTCACCACAGTAGGAACACAAGCAT
TATTCTATAAATTCACAGCGATGAGCCATTACAGCTATTTCGATCTCATT
TATTTCACATGTATATCAATGCTGACAATAGGTTTCGGTGATATAACTCC
AAATCTACAGTATTATTATCAACTCGATATTCTTATGTTGGTTTTGATAA
CGACTGTGGAGCTGGTCTTCTTTTTCTGGTCTTTTTCGTTGATCGGATCC
ATTATTGATTTTCTGACATCTTTTGAAAGTGATTTTGCATCGCAACAGAA
CCATCATCACCAGAAAAAACGTGAAAACAATGTTGTTGATGTTCCTGATG
AGAATTTGAAATGTCATGTCGAAATAAACCGTAACACTTTAGATGATAAG
GCACCAAATATTGTTTAACTTTGAGAAACTACCGAATAACACCCCTCGGG
GCTTGATGGTCCAGATCATAAAAAATACTTTCAAACAGTAACCCCAAACT
AACTGTGAGGGGTGCGAGGAGGGCATATGTTTATATATTTTACAGACCAG
AACAGATGAAATCCTTTTTCTCCATAAAAATTTTATTCAAAAACTTTTCT
TTTGTTTTAAATGGTCCACCCTATCTCAGATGAATTTATTTTTCATTCAA
TACTGGATAATGTTGTAAGATTGCAGATTCACTCAACAATATTCATCAAG
AAGTTAATTTTGACCTTCGTATTTTTTTCTCTCAACAATATTGACCATAT
TCCATATTCTCAAGCATCTTTTCAACCAGCAAATACCCCATTTTTTATTG
AACTGAAGATCACTAGAATGGCTGTTTGAAAATTAATTTTTACATCAAAA
AAAAAGATATTAGGAAAAAAGCAAAAAATGCTGACGTCAGCAAAAGCTTG
TTTCTTGAATAACTCCAGTTTGGCCGATGATATAAACATGAAATTTGGAC
Coding sequence (CDS) from alignment at sc0003224:10328..13127- >TCONS_00042134 ID=TCONS_00042134|Name=TCONS_00042134|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at sc0003224:10328..13127- (Clytia hemisphaerica)
GTTATGGTAACATTGTTCCGAAATCCACTCCTGGCAGAGGATTGACAATA
TTGATAGCAATTATTGGTATTCCAATGGCGTCAGCGACTGTTCTGTTTTT
TGGCAAAGCAATTAACAACACTATCAAATATCTCATCGTATGCTTTGAAA
ACACTTGCTTGAAACATGAAAAAATTGTATGGTTTAAACGTAAATTTGCG
CTTATTCATTTTCTCTTAACTTTCACCACAGTAGGAACACAAGCATTATT
CTATAAATTCACAGCGATGAGCCATTACAGCTATTTCGATCTCATTTATT
TCACATGTATATCAATGCTGACAATAGGTTTCGGTGATATAACTCCAAAT
CTACAGTATTATTATCAACTCGATATTCTTATGTTGGTTTTGATAACGAC
TGTGGAGCTGGTCTTCTTTTTCTGGTCTTTTTCGTTGATCGGATCCATTA
TTGATTTTCTGACATCTTTTGAAAGTGATTTTGCATCGCAACAGAACCAT
CATCACCAGAAAAAACGTGAAAACAATGTTGTTGATGTTCCTGATGAGAA
TTTGAAATGTCATGTCGAAATAAACCGTAACACTTTAGATGATAAGGCAC
CAAATATTGTTTAAATGATAATCGAAGACATTGAAGAATCAAAAATAATT
TTCTGGAAAGAGATTCTGAACAATTTGAAACGATTCATCGCTTTTTCAAT
AGCTGCATTAGCTATCTCACTTGTATCATCAATCATCCTTTTCTTCGTTG
AAGAATGTTATTTTCATGTTCCCGAACAATGTCCAGCCGACTACCAACAA
TCTTTCGAACTTTGTCAAAATGTTGGTACAATGAACCAGACGACATTTGT
GAATGACACAGAAGCTTTTGAACTTTATATCAATGTCACTAAATTTTGCC
ACAATCGTGAATGCAAAATTGACAAATATTCGCAGAAAAGCTGCACCATT
GATCATAAAAAGTTTTTCAAATGGATGACTTTTATGCTGACAACTACTTT
TACCATCGGTTATGGTAACATTGTTCCGAAATCCACTCCTGGCAGAGGAT
TGACAATATTGATAGCAATTATTGGTATTCCAATGGCGTCAGCGACTGTT
CTGTTTTTTGGCAAAGCAATTAACAACACTATCAAATATCTCATCGTATG
CTTTGAAAACACTTGCTTGAAACATGAAAAAATTGTATGGTTTAAACGTA
AATTTGCGCTTATTCATTTTCTCTTAACTTTCACCACAGTAGGAACACAA
GCATTATTCTATAAATTCACAGCGATGAGCCATTACAGCTATTTCGATCT
CATTTATTTCACATGTATATCAATGCTGACAATAGGTTTCGGTGATATAA
CTCCAAATCTACAGTATTATTATCAACTCGATATTCTTATGTTGGTTTTG
ATAACGACTGTGGAGCTGGTCTTCTTTTTCTGGTCTTTTTCGTTGATCGG
ATCCATTATTGATTTTCTGACATCTTTTGAAAGTGATTTTGCATCGCAAC
AGAACCATCATCACCAGAAAAAACGTGAAAACAATGTTGTTGATGTTCCT
GATGAGAATTTGAAATGTCATGTCGAAATAAACCGTAACACTTTAGATGA
TAAGGCACCAAATATTGTTTAAATGATAATCGAAGACATTGAAGAATCAA
AAATAATTTTCTGGAAAGAGATTCTGAACAATTTGAAACGATTCATCGCT
TTTTCAATAGCTGCATTAGCTATCTCACTTGTATCATCAATCATCCTTTT
CTTCGTTGAAGAATGTTATTTTCATGTTCCCGAACAATGTCCAGCCGACT
ACCAACAATCTTTCGAACTTTGTCAAAATGTTGGTACAATGAACCAGACG
ACATTTGTGAATGACACAGAAGCTTTTGAACTTTATATCAATGTCACTAA
ATTTTGCCACAATCGTGAATGCAAAATTGACAAATATTCGCAGAAAAGCT
GCACCATTGATCATAAAAAGTTTTTCAAATGGATGACTTTTATGCTGACA
ACTACTTTTACCATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042134-exon-sc0003224-1575043694:12620..13127 | TCONS_00042134-exon-sc0003224-1575043694:12620..13127 | Clytia hemisphaerica | exon |
| TCONS_00042134-exon-sc0003224-1575043694:10328..11473 | TCONS_00042134-exon-sc0003224-1575043694:10328..11473 | Clytia hemisphaerica | exon |
| TCONS_00042134-exon-sc0003224-1510915933:12620..13127 | TCONS_00042134-exon-sc0003224-1510915933:12620..13127 | Clytia hemisphaerica | exon |
| TCONS_00042134-exon-sc0003224-1510915933:10328..11473 | TCONS_00042134-exon-sc0003224-1510915933:10328..11473 | Clytia hemisphaerica | exon |
| TCONS_00042134-exon-sc0003224-1491911889:12620..13127 | TCONS_00042134-exon-sc0003224-1491911889:12620..13127 | Clytia hemisphaerica | exon |
| TCONS_00042134-exon-sc0003224-1491911889:10328..11473 | TCONS_00042134-exon-sc0003224-1491911889:10328..11473 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003224 | supercontig | sc0003224:10328..13127 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071805 |
potassium ion transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
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