|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042131 ID=TCONS_00042131|Name=TCONS_00042131|organism=Clytia hemisphaerica|type=transcript|length=920bp
AATCAGGATGGATCAAGAAAcgaagtttataagaacaaacaaactCTGCA
AGCATTTGCTTTGCGTTTGTTGTTTTACCGAAGCTGTAACGATTACATGT
CAAAAAGAAAAGCGAGCAACAGAAGAACATAATAATCTGCCCTACACACT
TGTATCACAGAACCCGTTGGGACCTAACACTGGAAATTGCAGTCGTAAAT
TTCTGTTGCAAAATATCTTATAGGGGAAGAACATTGTGACGGGATAAACT
GGGAATCAAACGCAAGTGTAAAATTTGATGATACTCTGTTTGGTTATTGT
AAAGCCGCTGGTATATGAGGACATAAACGGATGATATACACTGTCCCGGA
CATTTACTGACACACATGGAcgtacattttttatatttcatatataatag
aacacccctttctcagtgacccagtgaagttttgaaacccacCGGGACTG
ACTATAGGATCTCCAAAACTCACTAAGTGATAACTTTTAACTTCGTCGGG
TAGGGAAAAATCGACTTTCAAGTaatatttttcaagtaataTTCAGGCCA
GTCTCAcaagaaaatctacaaaataagtagatgtataaattttcttaatt
ctacGGACgtctgtagaattacggcaCTCGTTAATATCGACATATAATGT
AGAATGTAGAATTCAACTGATTTTGTAGATATTCTAGAACGATTTCGCTC
GAGACTCGAGCTCCAAACCCCTGACCCAAGAACTTTTGTAGTGACGacgg
aaaacacgagttaaaaaacacgagttaaaaaacacgagttacaaaaagca
cgagttacgttaaatgtgacgtcatgaatgggaaattatgacgtcacaag
tagataatttaactcgtcaatttatggtgcaccttaaactgacgagttaa
ttaactcgtcaatttatggt Run BLAST on NCBI transcript from alignment at sc0003221:4847..5766 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042131 ID=TCONS_00042131|Name=TCONS_00042131|organism=Clytia hemisphaerica|type=transcript|length=920bp|location=Sequence derived from alignment at sc0003221:4847..5766 (Clytia hemisphaerica)
accataaattgacgagttaattaactcgtcagtttaaggtgcaccataaa
ttgacgagttaaattatctacttgtgacgtcataatttcccattcatgac
gtcacatttaacgtaactcgtgctttttgtaactcgtgttttttaactcg
tgttttttaactcgtgttttccgtCGTCACTACAAAAGTTCTTGGGTCAG
GGGTTTGGAGCTCGAGTCTCGAGCGAAATCGTTCTAGAATATCTACAAAA
TCAGTTGAATTCTACATTCTACATTATATGTCGATATTAACGAGtgccgt
aattctacagacGTCCgtagaattaagaaaatttatacatctacttattt
tgtagattttcttgTGAGACTGGCCTGAAtattacttgaaaaatattACT
TGAAAGTCGATTTTTCCCTACCCGACGAAGTTAAAAGTTATCACTTAGTG
AGTTTTGGAGATCCTATAGTCAGTCCCGgtgggtttcaaaacttcactgg
gtcactgagaaaggggtgttctattatatatgaaatataaaaaatgtacg
TCCATGTGTGTCAGTAAATGTCCGGGACAGTGTATATCATCCGTTTATGT
CCTCATATACCAGCGGCTTTACAATAACCAAACAGAGTATCATCAAATTT
TACACTTGCGTTTGATTCCCAGTTTATCCCGTCACAATGTTCTTCCCCTA
TAAGATATTTTGCAACAGAAATTTACGACTGCAATTTCCAGTGTTAGGTC
CCAACGGGTTCTGTGATACAAGTGTGTAGGGCAGATTATTATGTTCTTCT
GTTGCTCGCTTTTCTTTTTGACATGTAATCGTTACAGCTTCGGTAAAACA
ACAAACGCAAAGCAAATGCTTGCAGagtttgtttgttcttataaacttcg
TTTCTTGATCCATCCTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042131-exon-sc0003221-1491911889:4847..5766 | TCONS_00042131-exon-sc0003221-1491911889:4847..5766 | Clytia hemisphaerica | exon |
| TCONS_00042131-exon-sc0003221-1510915933:4847..5766 | TCONS_00042131-exon-sc0003221-1510915933:4847..5766 | Clytia hemisphaerica | exon |
| TCONS_00042131-exon-sc0003221-1575043694:4847..5766 | TCONS_00042131-exon-sc0003221-1575043694:4847..5766 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003221 | supercontig | sc0003221:4847..5766 . |
Blast
The following BLAST results are available for this feature:
|
