TCONS_00042130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042130
Unique NameTCONS_00042130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042130 ID=TCONS_00042130|Name=TCONS_00042130|organism=Clytia hemisphaerica|type=transcript|length=507bp
TTTCTCCTTTCCAGAACATCCAAATCCATTCTCTAAAGCTTGGGCATTAA
ATTTCCATCAGCTTATCCCTGAAGCATACTTTGAAGGTGTCCTCAAACTA
TGGTCTAAAAAATTCCACATTGCTCGAAGTAGGATGCACTTTTCTGACTT
CtgatttttggtttttcacCTCCAAAGAATTTGGTTTCCAGAGGATTCTT
CTCCAAATTTCtccgattttcaaaattttttgtaatTCGAGGAACAAGAA
TGagcaaaaaagataaattttgagGCCGCCAGCCGCCCGAACAAAAACAC
ACGATTTAATATGACGTGCCGTATGttgcaaaaatcatttttccgTTTGC
TGGTAAAAACAtggattttattacaaaaatacactttttagcattgtaag
agttcattttttagcactcaaaaagttaacattttagcattgtaaaagtg
aactttttagcattgtaaaaagttcattttttagtattcaaaaagttaaa
tttttag
Run BLAST on NCBI

transcript from alignment at sc0003220:12798..13304

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042130 ID=TCONS_00042130|Name=TCONS_00042130|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at sc0003220:12798..13304 (Clytia hemisphaerica)
ctaaaaatttaactttttgaatactaaaaaatgaactttttacaatgcta
aaaagttcacttttacaatgctaaaatgttaactttttgagtgctaaaaa
atgaactcttacaatgctaaaaagtgtatttttgtaataaaatccaTGTT
TTTACCAGCAAAcggaaaaatgatttttgcaaCATACGGCACGTCATATT
AAATCGTGTGTTTTTGTTCGGGCGGCTGGCGGCctcaaaatttatctttt
ttgctCATTCTTGTTCCTCGAattacaaaaaattttgaaaatcggaGAAA
TTTGGAGAAGAATCCTCTGGAAACCAAATTCTTTGGAGgtgaaaaaccaa
aaatcaGAAGTCAGAAAAGTGCATCCTACTTCGAGCAATGTGGAATTTTT
TAGACCATAGTTTGAGGACACCTTCAAAGTATGCTTCAGGGATAAGCTGA
TGGAAATTTAATGCCCAAGCTTTAGAGAATGGATTTGGATGTTCTGGAAA
GGAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026003XLOC_026003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042130-exon-sc0003220-1491911889:12798..13304TCONS_00042130-exon-sc0003220-1491911889:12798..13304Clytia hemisphaericaexon
TCONS_00042130-exon-sc0003220-1510915933:12798..13304TCONS_00042130-exon-sc0003220-1510915933:12798..13304Clytia hemisphaericaexon
TCONS_00042130-exon-sc0003220-1575043694:12798..13304TCONS_00042130-exon-sc0003220-1575043694:12798..13304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003220supercontigsc0003220:12798..13304 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14875	0.419449	0	0	0	0.396247	1.42909	0.836993	0.60631	0.283934	0.67677	0.0927597	0.499681	0.221265	0.537404	0.472327	0.350609	0.994924	0.136391	0.862944	0.415468	0.452165	0	0.153652	0	0.829147	0.189174	0	0.581513	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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