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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042126 ID=TCONS_00042126|Name=TCONS_00042126|organism=Clytia hemisphaerica|type=transcript|length=1489bp
TGATGTGAGAACGGCAAGTCCCGTTAAAACACCAATTACTGCTCCTACAT
CAACAGAGACCAATGCTGCCAAGACCATCAAGTTAACACGACCAACAGTC
ACAGCACCCACCAAAGTTGCTAACGCTCCTCCCACTGAGAACGCAAGCGG
GGTCTCTGTTCGCTCTTTCGAAGAAATcatgaaagaaaaaagtctaCGTA
AACAACGTGAAATGCAGGGACAACAAAACAAGGTCGAAGCTAAACCTATA
CAGAGTTTCCTACGACGTCGTTCTCTATCCAATCAACGCAATCAAACACA
ACCTGGAATCACCACTTCAGTTAGTAACGACAGTACCAAAAGCACTGAGA
AAACTGTTCCAGCTACGACAGCCGTGATTGCAGAAACCGAAACAGCAAAA
GAAACTACGACAATGGTTCTACCGCCGGTTGCGAAAATTATCGGTCGACG
ACGAAGCTCCTCACCACTTCAACCAGGAGTCGAGGTCACTAAAGTTGCCC
CCATCAAAATTAAACGAAAACTCTCCTCATCGTCCAGCTCAGACCTGGCG
AAATCAAGAACACAAACGCCTCCACCACAAGTTGTTCCTACAATACCCGC
AAAATCTGACGACGTTTTCGATACACTGAAAGACGTCAGGGCAAACAACG
AATCATCGACGAACGGAGCATCTCCGATTGCGGAAGAGACAGAACCACTT
TCACAAGCTTCAATGGAAGACATACAGGAAGCACTAGATGAGAAGCAACG
TGAACGTGAGCAGGAGATGTTATCGGACGATGAATTCGACCGACTGAACG
ATCTCTTATCCGACGATGACGGTGACGGTGACGAAGATGGAGATGAAGTC
AACGATGATGATTTCATGATGGAACTAGAACAAATGATCGATAGTTAATC
ACCTCTATCATCTACAATTATCTCCATAATGTCTATGGCAGAAATTGAGC
TACAAACTAGTTTTATCTCCTTAATCAAAATGCATTTTCGTAACTGTTAC
ACCGTGCTCCTAGTTTCGGAGTTCACTTGATTTGCGCTTGTGGTTGGTAT
CCTCTCCACAATGCCGATGACAAAGTGTGTCTCCATTACGTTATATGCAC
TAAAAAAGACATCGGTCTTAGCTATAGTGTCAGTGACTGTTAGGTCCTTG
AAGGGCCTTCCAGTTGTTATTTCTATAACACTTTTGAAAGAGCTTTGTTA
TCATAATAATTGGAATTTCAAGAACTTGGTTTTCCTTTGGCAAGATAAAT
GGTACAACCGATTTGTTTGTGGATAGCTTTTGTCACCTGAGTtggatttt
ttttggttttcagtTTGGGTGTGTTTTTACGAGTTCAAAATTTGCCTAGA
AATGTCCTTGTGAAgaattatcaagaaatttttaaaatgtcagTCTTTCT
GTTTTAAAGAAAcggtctgtttttttttttaatttgctgAAAAGATGAAT
TTAacgatttttagatttttttaaattgatgaTATCTCG Run BLAST on NCBI protein sequence of TCONS_00042126-protein >TCONS_00042126-protein ID=TCONS_00042126-protein|Name=TCONS_00042126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
DVRTASPVKTPITAPTSTETNAAKTIKLTRPTVTAPTKVANAPPTENASG
VSVRSFEEIMKEKSLRKQREMQGQQNKVEAKPIQSFLRRRSLSNQRNQTQ
PGITTSVSNDSTKSTEKTVPATTAVIAETETAKETTTMVLPPVAKIIGRR
RSSSPLQPGVEVTKVAPIKIKRKLSSSSSSDLAKSRTQTPPPQVVPTIPA
KSDDVFDTLKDVRANNESSTNGASPIAEETEPLSQASMEDIQEALDEKQR
EREQEMLSDDEFDRLNDLLSDDDGDGDEDGDEVNDDDFMMELEQMIDS Run BLAST on NCBI transcript from alignment at sc0003219:2449..6379- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042126 ID=TCONS_00042126|Name=TCONS_00042126|organism=Clytia hemisphaerica|type=transcript|length=3931bp|location=Sequence derived from alignment at sc0003219:2449..6379- (Clytia hemisphaerica)
TGATGTGAGAACGGCAAGTCCCGTTAAAACACCAATTACTGCTCCTACAT
CAACAGAGACCAATGCTGCCAAGACCATCAAGGTTCGTATTCGTATTTTA
TGAGAAATTCATGATATGCACCACTGCAATGGCTTCACGAAATTATGCAA
CTTTTCTGTTTTTGTTCTACCCTTCCACCCAATACGTCACTTGAAAAATG
GGTGGAAAATTTTAAAAANTCTGTTTTTGTTCTACCCTTCCACCCAATAC
GTCACTTGAAAAATGGGTGGAAAATTTTAAAAATTCTCAGAAGACTCTCC
AGTGGTGCATGTCATGAATAAGTAATTCAAAGAACTGTGATTTCGAATAA
TAGTCAAATTAAATTCTGAAATAACGCTGCCTCCTTAAGATTGTTACCAA
TATAGTCCATAGTGATCCACAGTGTGTCCAGAAAAAGGCATGAACAGCAT
TTATACAAATAAAAATCCTCAGATCTTACATAAACTTGACCTAAGGTTCT
CGATCTCTTTTTCGAGATCCCAATTTAATATAATCTTGGGAATTCAATGT
TTAATATATTTATTGCACAACAAAGACATTATATCCATTCTAAACTCCAG
TGGTTTAGTCAGTTTTATATTATATAAAATCTACCCCGCTTTATTTTGGG
CACACTGTACATTTGCAAGCCATTGTTGAATAAGTTCCACTTCCACCTAA
AGCAAAACCTTCTAAGGGCTTTCTAGCTATAAATTTTCTTTTTCATTTCT
ACAGTTAACACGACCAACAGTCACAGCACCCACCAAAGTTGCTAACGCTC
CTCCCACTGAGAACGCAAGCGGGGTCTCTGTTCGCTCTTTCGAAGAAATC
ATGAAAGAAAAAAGTCTACGTAAACAACGTGAAATGCAGGGACAACAAAA
CAAGGTCGAAGCTAAACCTATACAGAGTTTCCTACGACGTCGTTCTCTAT
CCAATCAACGCAATCAAACACAACCTGGAATCACCACTTCAGTTAGTAAC
GACAGTACCAAAAGCACTGAGAAAACTGTTCCAGCTACGACAGCCGTGAT
TGCAGAAACCGAAACAGCAAAAGAAACTACGACAATGGTTCTACCGCCGG
TTGCGAAAATTATCGGTCGACGACGAAGCTCCTCACCACTTCAACCAGGA
GTCGAGGTCACTAAAGTTGCCCCCATCAAAATTAAACGAAAACTCTCCTC
ATCGTCCAGCTCAGACCTGGCGAAATCAAGAACACAAACGCCTCCACCAC
AAGTTGTTCCTACAATACCCGCAAAATCTGACGACGTTTTCGATACACTG
AAAGACGTCAGGGCAAACAACGAATCATCGACGAACGGAGCATCTCCGAT
TGCGGAAGAGACAGAACCACTTTCACAAGCTTCAATGGAAGACATACAGG
AAGCACTGTAAGTAAAACTTCTGTATAGTCCAGGGAAAGTGTGCATCAAT
TGTGCGTTTTTGACTAGAAAGCATGAAATTTGGTACAGTGGTACCTTACG
GGGTAAGAAACATTTTAAGCCTCTGGCCCACTTCCGGAACACCTTTTTGT
GTATTTTACAGACCAGAATGCTTCTCAGGCAAATTTTTATCTTCAAAGCA
TCTCATATGATATTTTGTTGGAAAGGTTTTCTAACACTGATTCAATAAAC
ATCACAACATATATCTGAAAATGGACTGGGTCCGAGTTATGAGCTACGGA
AGTAATTTACAGACCAGTCTGCATACCCGAAAAAAAAATTTATTTTTGTT
CCAAAGCATGTCATATCATATACCGTTGGAAAGGTTTTTTCACACTGATT
CTAAAAATCATCATGGTATGTATCTCAAAATGGACTGGGTCCGAGTTATA
GGCCATGGGAGTATTTTACAGACCAGAATGGCTCCTGGCCCAAAACTTGG
ACCTCGTCCTTTTTCAGATACATGTTGTGATGTTTTTTAGAACCAGTCTG
AAAAAACCTTTCAAACGGTATATAACACGACATGTTTTGGAGATAAAAAT
ATTTTTTGTATGCCCGGGAGCCGTTCTGGTCTGTAAATTACTCCTATGGC
TTATTTCACGGACCCAGTCCATTTTGAGATGCATATTATGATGATTTTTA
GAATCAGTATGAAAAAACCTTTCCAACGGTATATGATATGACATATTTTG
GAACAAATATAAACAAATTTTTCGGGCATGCAGACTGGTCTGTAAATTAC
TTCCGTAGCCCATAACTCGGATCCAGTCCATTTACAGATATATGTTGTGA
TGTTTTTTAGAATCAGTGTGAGAAAACCTTTCCAACGATATATCATATGA
CATGCTTTGAAGACAAAAAATCTTTTTCTTGCCTGGGAGGCATTCTGGTC
TGTAAAATACACAAACAGGTGTTTCAGAAGTGGGTCAGAGGCTTAAAATG
TTTCTTACCCCCTAAGGTACCACTGTACCAAATGTCATGCTTTCTAGTCA
AAAATGCACAATTGTATTCATTTTTAGCACACTTTCCCTGGACTAGTAGT
AGAAAAATATTCTTCTGTATATACAAGATGGTGCTGACCGTTACACTTTT
TTGCATTCCAAATTTTTTTCCCAAATTCTGTCTTTATCATCAGATTTGTA
GAATTCCTACGCATAACATAAGCATATATGTCAGCCTGGAATTTTTTTCA
AGTTTTATCTGTTCAAAAAGGTTTGGTAGAGGTCAAGTAAAAAAAGAAAT
TCCACGGCAAGCTACATTCAACTGCTCACAAAATCTGAACAAATTTTTAC
AAAATTTCTGAAATTTCACTAAAAACTTGGCTCAGGGTGAAACATAAGCA
TAAACATATAATAAGCATAAGCTTTGTCTGGATGCTTTAAGAACCTAAGC
ATACACGAGCCTGACCAAGGGGCATACGCTTGGCTATAAAAAAAACATTT
AATCCATATTTTTCCATTTAGAGATGAGAAGCAACGTGAACGTGAGCAGG
AGATGTTATCGGACGATGAATTCGACCGACTGAACGATCTCTTATCCGAC
GATGACGGTGACGGTGACGAAGATGGAGATGAAGTCAACGATGATGATTT
CATGATGGAACTAGAACAAATGATCGATAGTTAATCACCTCTATCATCTA
CAATTATCTCCATAATGTCTATGGCAGAAATTGAGCTACAAACTAGTTTT
ATCTCCTTAATCAAAATGCATTTTCGTAACTGTTACACCGTGCTCCTAGT
TTCGGAGTTCACTTGATTTGCGCTTGTGGTTGGTATCCTCTCCACAATGC
CGATGACAAAGTGTGTCTCCATTACGTTATATGCACTAAAAAAGACATCG
GTCTTAGCTATAGTGTCAGTGACTGTTAGGTCCTTGAAGGGCCTTCCAGT
TGTTATTTCTATAACACTTTTGAAAGAGCTTTGTTATCATAATAATTGGA
ATTTCAAGAACTTGGTTTTCCTTTGGCAAGATAAATGGTACCAATATGTA
TCTATAGTTTATGGGCGATTTGTTAACGAATTCAATAAAGCACAAAATAT
TTTCTGAGGCATTCTTTTGACTTAAAAATCTCTCAAACTGATTTGGTTGA
CAGATTATTTCATACGATTTCTTTCTCCACTTTATTTGTGAAACTTGTGC
AGTGCCTTCTAATATGCCAAATATAAACATATGAATAATTTCTCAATTTT
TTAATTTGACCTTTATATTAGAGTATTATCTTTATCTTTTTAGGTACAAC
CGATTTGTTTGTGGATAGCTTTTGTCACCTGAGTTGGATTTTTTTTGGTT
TTCAGTTTGGGTGTGTTTTTACGAGTTCAAAATTTGCCTAGAAATGTCCT
TGTGAAGAATTATCAAGAAATTTTTAAAATGTCAGTCTTTCTGTTTTAAA
GAAACGGTCTGTTTTTTTTTTTAATTTGCTGAAAAGATGAATTTAACGAT
TTTTAGATTTTTTTAAATTGATGATATCTCG Coding sequence (CDS) from alignment at sc0003219:2449..6379- >TCONS_00042126 ID=TCONS_00042126|Name=TCONS_00042126|organism=Clytia hemisphaerica|type=CDS|length=2691bp|location=Sequence derived from alignment at sc0003219:2449..6379- (Clytia hemisphaerica)
AGATGAGAAGCAACGTGAACGTGAGCAGGAGATGTTATCGGACGATGAAT
TCGACCGACTGAACGATCTCTTATCCGACGATGACGGTGACGGTGACGAA
GATGGAGATGAAGTCAACGATGATGATTTCATGATGGAACTAGAACAAAT
GATCGATAGTTAATTAACACGACCAACAGTCACAGCACCCACCAAAGTTG
CTAACGCTCCTCCCACTGAGAACGCAAGCGGGGTCTCTGTTCGCTCTTTC
GAAGAAATCATGAAAGAAAAAAGTCTACGTAAACAACGTGAAATGCAGGG
ACAACAAAACAAGGTCGAAGCTAAACCTATACAGAGTTTCCTACGACGTC
GTTCTCTATCCAATCAACGCAATCAAACACAACCTGGAATCACCACTTCA
GTTAGTAACGACAGTACCAAAAGCACTGAGAAAACTGTTCCAGCTACGAC
AGCCGTGATTGCAGAAACCGAAACAGCAAAAGAAACTACGACAATGGTTC
TACCGCCGGTTGCGAAAATTATCGGTCGACGACGAAGCTCCTCACCACTT
CAACCAGGAGTCGAGGTCACTAAAGTTGCCCCCATCAAAATTAAACGAAA
ACTCTCCTCATCGTCCAGCTCAGACCTGGCGAAATCAAGAACACAAACGC
CTCCACCACAAGTTGTTCCTACAATACCCGCAAAATCTGACGACGTTTTC
GATACACTGAAAGACGTCAGGGCAAACAACGAATCATCGACGAACGGAGC
ATCTCCGATTGCGGAAGAGACAGAACCACTTTCACAAGCTTCAATGGAAG
ACATACAGGAAGCACTGATGTGAGAACGGCAAGTCCCGTTAAAACACCAA
TTACTGCTCCTACATCAACAGAGACCAATGCTGCCAAGACCATCAAGAGA
TGAGAAGCAACGTGAACGTGAGCAGGAGATGTTATCGGACGATGAATTCG
ACCGACTGAACGATCTCTTATCCGACGATGACGGTGACGGTGACGAAGAT
GGAGATGAAGTCAACGATGATGATTTCATGATGGAACTAGAACAAATGAT
CGATAGTTAATTAACACGACCAACAGTCACAGCACCCACCAAAGTTGCTA
ACGCTCCTCCCACTGAGAACGCAAGCGGGGTCTCTGTTCGCTCTTTCGAA
GAAATCATGAAAGAAAAAAGTCTACGTAAACAACGTGAAATGCAGGGACA
ACAAAACAAGGTCGAAGCTAAACCTATACAGAGTTTCCTACGACGTCGTT
CTCTATCCAATCAACGCAATCAAACACAACCTGGAATCACCACTTCAGTT
AGTAACGACAGTACCAAAAGCACTGAGAAAACTGTTCCAGCTACGACAGC
CGTGATTGCAGAAACCGAAACAGCAAAAGAAACTACGACAATGGTTCTAC
CGCCGGTTGCGAAAATTATCGGTCGACGACGAAGCTCCTCACCACTTCAA
CCAGGAGTCGAGGTCACTAAAGTTGCCCCCATCAAAATTAAACGAAAACT
CTCCTCATCGTCCAGCTCAGACCTGGCGAAATCAAGAACACAAACGCCTC
CACCACAAGTTGTTCCTACAATACCCGCAAAATCTGACGACGTTTTCGAT
ACACTGAAAGACGTCAGGGCAAACAACGAATCATCGACGAACGGAGCATC
TCCGATTGCGGAAGAGACAGAACCACTTTCACAAGCTTCAATGGAAGACA
TACAGGAAGCACTGATGTGAGAACGGCAAGTCCCGTTAAAACACCAATTA
CTGCTCCTACATCAACAGAGACCAATGCTGCCAAGACCATCAAGAGATGA
GAAGCAACGTGAACGTGAGCAGGAGATGTTATCGGACGATGAATTCGACC
GACTGAACGATCTCTTATCCGACGATGACGGTGACGGTGACGAAGATGGA
GATGAAGTCAACGATGATGATTTCATGATGGAACTAGAACAAATGATCGA
TAGTTAATTAACACGACCAACAGTCACAGCACCCACCAAAGTTGCTAACG
CTCCTCCCACTGAGAACGCAAGCGGGGTCTCTGTTCGCTCTTTCGAAGAA
ATCATGAAAGAAAAAAGTCTACGTAAACAACGTGAAATGCAGGGACAACA
AAACAAGGTCGAAGCTAAACCTATACAGAGTTTCCTACGACGTCGTTCTC
TATCCAATCAACGCAATCAAACACAACCTGGAATCACCACTTCAGTTAGT
AACGACAGTACCAAAAGCACTGAGAAAACTGTTCCAGCTACGACAGCCGT
GATTGCAGAAACCGAAACAGCAAAAGAAACTACGACAATGGTTCTACCGC
CGGTTGCGAAAATTATCGGTCGACGACGAAGCTCCTCACCACTTCAACCA
GGAGTCGAGGTCACTAAAGTTGCCCCCATCAAAATTAAACGAAAACTCTC
CTCATCGTCCAGCTCAGACCTGGCGAAATCAAGAACACAAACGCCTCCAC
CACAAGTTGTTCCTACAATACCCGCAAAATCTGACGACGTTTTCGATACA
CTGAAAGACGTCAGGGCAAACAACGAATCATCGACGAACGGAGCATCTCC
GATTGCGGAAGAGACAGAACCACTTTCACAAGCTTCAATGGAAGACATAC
AGGAAGCACTGATGTGAGAACGGCAAGTCCCGTTAAAACACCAATTACTG
CTCCTACATCAACAGAGACCAATGCTGCCAAGACCATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042126-exon-sc0003219-1575043694:6298..6379 | TCONS_00042126-exon-sc0003219-1575043694:6298..6379 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1575043694:4973..5625 | TCONS_00042126-exon-sc0003219-1575043694:4973..5625 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1575043694:2943..3458 | TCONS_00042126-exon-sc0003219-1575043694:2943..3458 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1575043694:2449..2686 | TCONS_00042126-exon-sc0003219-1575043694:2449..2686 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1510915933:6298..6379 | TCONS_00042126-exon-sc0003219-1510915933:6298..6379 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1510915933:4973..5625 | TCONS_00042126-exon-sc0003219-1510915933:4973..5625 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1510915933:2943..3458 | TCONS_00042126-exon-sc0003219-1510915933:2943..3458 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1510915933:2449..2686 | TCONS_00042126-exon-sc0003219-1510915933:2449..2686 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1491911889:6298..6379 | TCONS_00042126-exon-sc0003219-1491911889:6298..6379 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1491911889:4973..5625 | TCONS_00042126-exon-sc0003219-1491911889:4973..5625 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1491911889:2943..3458 | TCONS_00042126-exon-sc0003219-1491911889:2943..3458 | Clytia hemisphaerica | exon |
| TCONS_00042126-exon-sc0003219-1491911889:2449..2686 | TCONS_00042126-exon-sc0003219-1491911889:2449..2686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003219 | supercontig | sc0003219:2449..6379 - |
Blast
The following BLAST results are available for this feature:
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