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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042116 ID=TCONS_00042116|Name=TCONS_00042116|organism=Clytia hemisphaerica|type=transcript|length=1572bp
GCTTTGGCGGGACACAAAATTAACACGGCTGAGCTGTATCTCCTATCCAG
CTGGTCATTCAGCTTTCAATCCGATCGAGCACGCTTGGTCGCCTCTAAGC
AACGCCATGACATCAGTGACACTTTCANCAAAATTAACACGGCTGAGCTG
TATCTCCTATCCAGCTGGTCATTCAGCTTTCAATCCGATCGAGCACGCTT
GGTCGCCTCTAAGCAACGCCATGACATCAGTCACACTTTCATCGTGTTTA
CCAGGTGAAGACCAACCACCAAACAAGCAAACAGAGTTACCCCAAGAAGA
AATCAGCACGAAAACCAGATCCATGCTGGAAAATGCTGCTCGAGAGCTTT
CCAGCTACTGGGAAAAACTCACCTATGACGGAAATGCAGTTATTCCTCTC
CCAGTAGAGACTGACGGTGTCTACAATGACCATTCTAAAGTTGAGGATTT
TGTAAACGCACCACTGAGAGATCTGGAAGGCAAGGAGTTGGAGCCCCTTC
GAAAAGAGTTTCTCTTTTTCTGTCGCCATGTTGACCGACGAAAAAACTCA
GTGTCATTCATGAAGTGTCAGCTGTTCAAAAAGATCCCTTGCACTATTTG
CAACGAAAACCCGAATGTATCAATTGGTATTTTACTTCTATCACCGAAAT
GCACCGACATAGAAGGTTGCTTCATCCAAAAGTTGCCATTCAGAACTTGC
CCCATCCAAAAAGTGGAAAGCAGGTCGATAGCCTTTTTGTGTGCAACTTT
AAAGTAAATGGAAACAAATGTGGTCTGTCTTTCCCTACTTATCATCAGCT
CAACAAGCACAAAGAAAAGTCTGGTCACAAGAGACAACGCGCCAAAGCTG
CACAAGAGGAAATTCAAACAAAGGCAAAGAAGGCAAAGAAGATCGCAAGC
GAAAAGTCGAAGATCAAAGATTTCTTTTCGAAGAAAATCGTTATCGTCGA
CACACCATCGGAGAAAGAAAATGTAAACGTCAACCAGCAGCCTGGACCAG
CTGATCAACCGAGAGAACCCGTCAACAATTCCAATGAAAGACCGAAAAGA
AAGAGGAAACAAACAGAAGAAGAGGGTGTTGAAGACGCCGACGAGCCTTG
CGCAGCTCCGGAATGTGAGATCGACTGTATGCGCAAGGCAAATCGCGATA
TCAAGTTGATAGCTTGCGACAGCTGTGACGATTGGTGGCACACCTATTGT
TTCAATGGTGTTAATAAAACTATCAAAAACTTTAATTGTCCTCCTTGTAT
GAGTGAGAATGATTTCCGTATCGAAAAATAGgctatttttgtttcatttg
tcaTCTAATCTTGTTTGTACacttattgatatttttcttagcTTTTCCAA
AAGGTTCAAAAAGTTTAATCGAAAACAATAATACATTAACGGTCTTTCCA
TTCAGCCCTTCATTGATTATTTCACATCGTTTATTAAAAGTAAGCcggga
aaatcagcggaaataTCCCAGAAAAGTCATTGAAAAATTCCGATCCGGTG
ACTTTGTCTCTCATAACTTTACGGAACCAGGAAGCCATCTATACTTTTGT
ATTATCTCGTTTGTTGATAATC Run BLAST on NCBI protein sequence of TCONS_00042116-protein >TCONS_00042116-protein ID=TCONS_00042116-protein|Name=TCONS_00042116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
LWRDTKLTRLSCISYPAGHSAFNPIEHAWSPLSNAMTSVTLSXKLTRLSC
ISYPAGHSAFNPIEHAWSPLSNAMTSVTLSSCLPGEDQPPNKQTELPQEE
ISTKTRSMLENAARELSSYWEKLTYDGNAVIPLPVETDGVYNDHSKVEDF
VNAPLRDLEGKELEPLRKEFLFFCRHVDRRKNSVSFMKCQLFKKIPCTIC
NENPNVSIGILLLSPKCTDIEGCFIQKLPFRTCPIQKVESRSIAFLCATL
K Run BLAST on NCBI transcript from alignment at sc0003217:5714..7285 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042116 ID=TCONS_00042116|Name=TCONS_00042116|organism=Clytia hemisphaerica|type=transcript|length=1572bp|location=Sequence derived from alignment at sc0003217:5714..7285 (Clytia hemisphaerica)
GATTATCAACAAACGAGATAATACAAAAGTATAGATGGCTTCCTGGTTCC
GTAAAGTTATGAGAGACAAAGTCACCGGATCGGAATTTTTCAATGACTTT
TCTGGGAtatttccgctgattttcccgGCTTACTTTTAATAAACGATGTG
AAATAATCAATGAAGGGCTGAATGGAAAGACCGTTAATGTATTATTGTTT
TCGATTAAACTTTTTGAACCTTTTGGAAAAgctaagaaaaatatcaataa
gtGTACAAACAAGATTAGAtgacaaatgaaacaaaaatagcCTATTTTTC
GATACGGAAATCATTCTCACTCATACAAGGAGGACAATTAAAGTTTTTGA
TAGTTTTATTAACACCATTGAAACAATAGGTGTGCCACCAATCGTCACAG
CTGTCGCAAGCTATCAACTTGATATCGCGATTTGCCTTGCGCATACAGTC
GATCTCACATTCCGGAGCTGCGCAAGGCTCGTCGGCGTCTTCAACACCCT
CTTCTTCTGTTTGTTTCCTCTTTCTTTTCGGTCTTTCATTGGAATTGTTG
ACGGGTTCTCTCGGTTGATCAGCTGGTCCAGGCTGCTGGTTGACGTTTAC
ATTTTCTTTCTCCGATGGTGTGTCGACGATAACGATTTTCTTCGAAAAGA
AATCTTTGATCTTCGACTTTTCGCTTGCGATCTTCTTTGCCTTCTTTGCC
TTTGTTTGAATTTCCTCTTGTGCAGCTTTGGCGCGTTGTCTCTTGTGACC
AGACTTTTCTTTGTGCTTGTTGAGCTGATGATAAGTAGGGAAAGACAGAC
CACATTTGTTTCCATTTACTTTAAAGTTGCACACAAAAAGGCTATCGACC
TGCTTTCCACTTTTTGGATGGGGCAAGTTCTGAATGGCAACTTTTGGATG
AAGCAACCTTCTATGTCGGTGCATTTCGGTGATAGAAGTAAAATACCAAT
TGATACATTCGGGTTTTCGTTGCAAATAGTGCAAGGGATCTTTTTGAACA
GCTGACACTTCATGAATGACACTGAGTTTTTTCGTCGGTCAACATGGCGA
CAGAAAAAGAGAAACTCTTTTCGAAGGGGCTCCAACTCCTTGCCTTCCAG
ATCTCTCAGTGGTGCGTTTACAAAATCCTCAACTTTAGAATGGTCATTGT
AGACACCGTCAGTCTCTACTGGGAGAGGAATAACTGCATTTCCGTCATAG
GTGAGTTTTTCCCAGTAGCTGGAAAGCTCTCGAGCAGCATTTTCCAGCAT
GGATCTGGTTTTCGTGCTGATTTCTTCTTGGGGTAACTCTGTTTGCTTGT
TTGGTGGTTGGTCTTCACCTGGTAAACACGATGAAAGTGTGACTGATGTC
ATGGCGTTGCTTAGAGGCGACCAAGCGTGCTCGATCGGATTGAAAGCTGA
ATGACCAGCTGGATAGGAGATACAGCTCAGCCGTGTTAATTTTGNTGAAA
GTGTCACTGATGTCATGGCGTTGCTTAGAGGCGACCAAGCGTGCTCGATC
GGATTGAAAGCTGAATGACCAGCTGGATAGGAGATACAGCTCAGCCGTGT
TAATTTTGTGTCCCGCCAAAGC Coding sequence (CDS) from alignment at sc0003217:5714..7285 >TCONS_00042116 ID=TCONS_00042116|Name=TCONS_00042116|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at sc0003217:5714..7285 (Clytia hemisphaerica)
TTACTTTAAAGTTGCACACAAAAAGGCTATCGACCTGCTTTCCACTTTTT
GGATGGGGCAAGTTCTGAATGGCAACTTTTGGATGAAGCAACCTTCTATG
TCGGTGCATTTCGGTGATAGAAGTAAAATACCAATTGATACATTCGGGTT
TTCGTTGCAAATAGTGCAAGGGATCTTTTTGAACAGCTGACACTTCATGA
ATGACACTGAGTTTTTTCGTCGGTCAACATGGCGACAGAAAAAGAGAAAC
TCTTTTCGAAGGGGCTCCAACTCCTTGCCTTCCAGATCTCTCAGTGGTGC
GTTTACAAAATCCTCAACTTTAGAATGGTCATTGTAGACACCGTCAGTCT
CTACTGGGAGAGGAATAACTGCATTTCCGTCATAGGTGAGTTTTTCCCAG
TAGCTGGAAAGCTCTCGAGCAGCATTTTCCAGCATGGATCTGGTTTTCGT
GCTGATTTCTTCTTGGGGTAACTCTGTTTGCTTGTTTGGTGGTTGGTCTT
CACCTGGTAAACACGATGAAAGTGTGACTGATGTCATGGCGTTGCTTAGA
GGCGACCAAGCGTGCTCGATCGGATTGAAAGCTGAATGACCAGCTGGATA
GGAGATACAGCTCAGCCGTGTTAATTTTGNTGAAAGTGTCACTGATGTCA
TGGCGTTGCTTAGAGGCGACCAAGCGTGCTCGATCGGATTGAAAGCTGAA
TGACCAGCTGGATAGGAGATACAGCTCAGCCGTGTTAATTTTGTGTCCCG
CCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042116-exon-sc0003217-1491911889:5714..7285 | TCONS_00042116-exon-sc0003217-1491911889:5714..7285 | Clytia hemisphaerica | exon |
| TCONS_00042116-exon-sc0003217-1510915933:5714..7285 | TCONS_00042116-exon-sc0003217-1510915933:5714..7285 | Clytia hemisphaerica | exon |
| TCONS_00042116-exon-sc0003217-1575043694:5714..7285 | TCONS_00042116-exon-sc0003217-1575043694:5714..7285 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003217 | supercontig | sc0003217:5714..7285 . |
Blast
The following BLAST results are available for this feature:
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