TCONS_00042113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042113
Unique NameTCONS_00042113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042113 ID=TCONS_00042113|Name=TCONS_00042113|organism=Clytia hemisphaerica|type=transcript|length=418bp
GCCTTTTCTTCTCAGTGGGTACACTAACCCTTTCTGACTTTCTAGTTGGT
TGAACTGTTGACATGGCCTTCCCACAAAACCACGGTATGTGTCCTTACTA
TGTTACATGTTCTCTTGTATTCATCTCTTGTTGTATGCTTGTCTACACTG
AATTATTGTACCTTTGTACAGAGGCTTTTGCATGTCTTGTATGTTTAGTT
AATACAGACCTTAGAACTTGTGAATTTTGTTAAGGATAAAGTTGTAACTT
CGTTTTTGTGCTATTTTGTTTTAGCCGTACAATATATGTTTATTGACGAG
TACAATCCCTAATGTCAGTTCCTGTGTGGCATTAACAGTAAGGACACATT
CAATGAATAGTTTTTCACTGTAAAGGCAGGCCACTGccaacaaaaccttt
aatccaAACTTGGTGAAA
Run BLAST on NCBI

transcript from alignment at sc0003213:7516..7933

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042113 ID=TCONS_00042113|Name=TCONS_00042113|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at sc0003213:7516..7933 (Clytia hemisphaerica)
TTTCACCAAGTTtggattaaaggttttgttggCAGTGGCCTGCCTTTACA
GTGAAAAACTATTCATTGAATGTGTCCTTACTGTTAATGCCACACAGGAA
CTGACATTAGGGATTGTACTCGTCAATAAACATATATTGTACGGCTAAAA
CAAAATAGCACAAAAACGAAGTTACAACTTTATCCTTAACAAAATTCACA
AGTTCTAAGGTCTGTATTAACTAAACATACAAGACATGCAAAAGCCTCTG
TACAAAGGTACAATAATTCAGTGTAGACAAGCATACAACAAGAGATGAAT
ACAAGAGAACATGTAACATAGTAAGGACACATACCGTGGTTTTGTGGGAA
GGCCATGTCAACAGTTCAACCAACTAGAAAGTCAGAAAGGGTTAGTGTAC
CCACTGAGAAGAAAAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025994XLOC_025994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042113-exon-sc0003213-1491911889:7516..7933TCONS_00042113-exon-sc0003213-1491911889:7516..7933Clytia hemisphaericaexon
TCONS_00042113-exon-sc0003213-1510915933:7516..7933TCONS_00042113-exon-sc0003213-1510915933:7516..7933Clytia hemisphaericaexon
TCONS_00042113-exon-sc0003213-1575043694:7516..7933TCONS_00042113-exon-sc0003213-1575043694:7516..7933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003213supercontigsc0003213:7516..7933 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.97398	2.48113	3.23807	0.376075	0.363062	0.27482	2.04348	3.80241	0.350481	0.531553	1.11208	1.2577	0.338686	0	0.215132	0.478537	0.318927	0.589556	0.541344	0	0.656496	0.720485	0.389264	1.15566	0.546759	0.162656	0.931044	0.00351523	1.03378	0.857177
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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