TCONS_00042104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042104
Unique NameTCONS_00042104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042104 ID=TCONS_00042104|Name=TCONS_00042104|organism=Clytia hemisphaerica|type=transcript|length=814bp
ACGGATTATTGATTTGAGCAAAGTGAGAGATCATTGGGGAGAACTGATTT
GCAAAAGTTTGATTGGCTTTCATGCATTTACTGgatgCGATTCGGTTAGT
TCTTTTCACGGCAAAGGTAAGAAGAAAGCACTTTCATGTGCCATCAAAGA
AGGAAGCGATCATCTTACCAAAGTGTTTTCCAAGCTTGGCGAAACACTCA
CAGTATCGGACGACCTTTTTGCATCCATTCAAAAATTTGTTTGCTCCTTA
TACGGAAAAGAGTCAATGGCATCGGTGAATGATTTGCGCTACGTTTTGTT
TAAAAGTGGGAAGTTCGAGGAGGAGTTTTTACCGCCAACCAGCGATGTTC
TTTTCCTACATTCATTACGAGCAAATTTTCAAGCCTTCATTTGGAAGCAC
GCCAACATCGCTTTCCTTTATCTACCAAGTTTTACTGAACATGGTTGGTT
AAGAAATGACGGGAACATTGTTATCAATTGGATGGACAAACCAATTGCAC
CTGATAGTGTTTTGAATTTCATCAAGTGTAAGTGCACTACAGGCTGCAAG
AATAATCGTTGTTCGTGTGTAAAAGCACTCTTAAAGTGCACAGATTTGTG
TGGTTGCATAGATtgtcaaaataagaaagatGGTGATGCATCCGATCAGG
AATCAGATGTTAGCGACAGAGAGATCACCTTTGCTGACTCTGACTCTGAA
GAGAGTGACATTGAGGAAGAACTTTGATTtgacatttcgatttttcaact
ATATTATCTTTTTACCCAGCTTTTTCGTTTAATTTGCCCCCTTTCAAATG
ATGTAGATAATGAG
Run BLAST on NCBI

protein sequence of TCONS_00042104-protein

>TCONS_00042104-protein ID=TCONS_00042104-protein|Name=TCONS_00042104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
RIIDLSKVRDHWGELICKSLIGFHAFTGCDSVSSFHGKGKKKALSCAIKE
GSDHLTKVFSKLGETLTVSDDLFASIQKFVCSLYGKESMASVNDLRYVLF
KSGKFEEEFLPPTSDVLFLHSLRANFQAFIWKHANIAFLYLPSFTEHGWL
RNDGNIVINWMDKPIAPDSVLNFIKCKCTTGCKNNRCSCVKALLKCTDLC
GCIDCQNKKDGDASDQESDVSDREITFADSDSEESDIEEEL
Run BLAST on NCBI

transcript from alignment at sc0003209:18849..19893-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042104 ID=TCONS_00042104|Name=TCONS_00042104|organism=Clytia hemisphaerica|type=transcript|length=1045bp|location=Sequence derived from alignment at sc0003209:18849..19893- (Clytia hemisphaerica)
ACGGATTATTGATTTGAGCAAAGTGAGAGATCATTGGGGAGAACTGATTT
GCAAAAGTTTGATTGGCTTTCATGCATTTACTGGTAAGAAACATTGTTTT
TCTGCAGATGTCTGTTTTCTTAAGGAAGAGTAAAAGCAAAGTAAAATTCC
AAATTCATTCATTTTCACCTGGGATTTAAAGTTCCAAAAAATAGACAAAA
AGGTAGAGCTTGAGTATGAAACTCATGCTCGACCTTCATGATCAATTTTT
TTATGAACTATTACTAGAGTAATGAACTTATTCATTCTTAAATGCTTTTC
TCTTTTTTTTTCAGGATGCGATTCGGTTAGTTCTTTTCACGGCAAAGGTA
AGAAGAAAGCACTTTCATGTGCCATCAAAGAAGGAAGCGATCATCTTACC
AAAGTGTTTTCCAAGCTTGGCGAAACACTCACAGTATCGGACGACCTTTT
TGCATCCATTCAAAAATTTGTTTGCTCCTTATACGGAAAAGAGTCAATGG
CATCGGTGAATGATTTGCGCTACGTTTTGTTTAAAAGTGGGAAGTTCGAG
GAGGAGTTTTTACCGCCAACCAGCGATGTTCTTTTCCTACATTCATTACG
AGCAAATTTTCAAGCCTTCATTTGGAAGCACGCCAACATCGCTTTCCTTT
ATCTACCAAGTTTTACTGAACATGGTTGGTTAAGAAATGACGGGAACATT
GTTATCAATTGGATGGACAAACCAATTGCACCTGATAGTGTTTTGAATTT
CATCAAGTGTAAGTGCACTACAGGCTGCAAGAATAATCGTTGTTCGTGTG
TAAAAGCACTCTTAAAGTGCACAGATTTGTGTGGTTGCATAGATTGTCAA
AATAAGAAAGATGGTGATGCATCCGATCAGGAATCAGATGTTAGCGACAG
AGAGATCACCTTTGCTGACTCTGACTCTGAAGAGAGTGACATTGAGGAAG
AACTTTGATTTGACATTTCGATTTTTCAACTATATTATCTTTTTACCCAG
CTTTTTCGTTTAATTTGCCCCCTTTCAAATGATGTAGATAATGAG

Coding sequence (CDS) from alignment at sc0003209:18849..19893-

>TCONS_00042104 ID=TCONS_00042104|Name=TCONS_00042104|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0003209:18849..19893- (Clytia hemisphaerica)
GATGCGATTCGGTTAGTTCTTTTCACGGCAAAGGTAAGAAGAAAGCACTT
TCATGTGCCATCAAAGAAGGAAGCGATCATCTTACCAAAGTGTTTTCCAA
GCTTGGCGAAACACTCACAGTATCGGACGACCTTTTTGCATCCATTCAAA
AATTTGTTTGCTCCTTATACGGAAAAGAGTCAATGGCATCGGTGAATGAT
TTGCGCTACGTTTTGTTTAAAAGTGGGAAGTTCGAGGAGGAGTTTTTACC
GCCAACCAGCGATGTTCTTTTCCTACATTCATTACGAGCAAATTTTCAAG
CCTTCATTTGGAAGCACGCCAACATCGCTTTCCTTTATCTACCAAGTTTT
ACTGAACATGGTTGGTTAAGAAATGACGGGAACATTGTTATCAATTGGAT
GGACAAACCAATTGCACCTGATAGTGTTTTGAATTTCATCAAGTGTAAGT
GCACTACAGGCTGCAAGAATAATCGTTGTTCGTGTGTAAAAGCACTCTTA
AAGTGCACAGATTTGTGTGGTTGCATAGATTGTCAAAATAAGAAAGATGG
TGATGCATCCGATCAGGAATCAGATGTTAGCGACAGAGAGATCACCTTTG
CTGACTCTGACTCTGAAGAGAGTGACATTGAGGAAGAACTTTGACGGATT
ATTGATTTGAGCAAAGTGAGAGATCATTGGGGAGAACTGATTTGCAAAAG
TTTGATTGGCTTTCATGCATTTACTGGATGCGATTCGGTTAGTTCTTTTC
ACGGCAAAGGTAAGAAGAAAGCACTTTCATGTGCCATCAAAGAAGGAAGC
GATCATCTTACCAAAGTGTTTTCCAAGCTTGGCGAAACACTCACAGTATC
GGACGACCTTTTTGCATCCATTCAAAAATTTGTTTGCTCCTTATACGGAA
AAGAGTCAATGGCATCGGTGAATGATTTGCGCTACGTTTTGTTTAAAAGT
GGGAAGTTCGAGGAGGAGTTTTTACCGCCAACCAGCGATGTTCTTTTCCT
ACATTCATTACGAGCAAATTTTCAAGCCTTCATTTGGAAGCACGCCAACA
TCGCTTTCCTTTATCTACCAAGTTTTACTGAACATGGTTGGTTAAGAAAT
GACGGGAACATTGTTATCAATTGGATGGACAAACCAATTGCACCTGATAG
TGTTTTGAATTTCATCAAGTGTAAGTGCACTACAGGCTGCAAGAATAATC
GTTGTTCGTGTGTAAAAGCACTCTTAAAGTGCACAGATTTGTGTGGTTGC
ATAGATTGTCAAAATAAGAAAGATGGTGATGCATCCGATCAGGAATCAGA
TGTTAGCGACAGAGAGATCACCTTTGCTGACTCTGACTCTGAAGAGAGTG
ACATTGAGGAAGAACTTTGACGGATTATTGATTTGAGCAAAGTGAGAGAT
CATTGGGGAGAACTGATTTGCAAAAGTTTGATTGGCTTTCATGCATTTAC
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025985XLOC_025985Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042104-proteinTCONS_00042104-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042104-exon-sc0003209-1575043694:19811..19893TCONS_00042104-exon-sc0003209-1575043694:19811..19893Clytia hemisphaericaexon
TCONS_00042104-exon-sc0003209-1575043694:18849..19579TCONS_00042104-exon-sc0003209-1575043694:18849..19579Clytia hemisphaericaexon
TCONS_00042104-exon-sc0003209-1510915933:19811..19893TCONS_00042104-exon-sc0003209-1510915933:19811..19893Clytia hemisphaericaexon
TCONS_00042104-exon-sc0003209-1510915933:18849..19579TCONS_00042104-exon-sc0003209-1510915933:18849..19579Clytia hemisphaericaexon
TCONS_00042104-exon-sc0003209-1491911889:19811..19893TCONS_00042104-exon-sc0003209-1491911889:19811..19893Clytia hemisphaericaexon
TCONS_00042104-exon-sc0003209-1491911889:18849..19579TCONS_00042104-exon-sc0003209-1491911889:18849..19579Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003209supercontigsc0003209:18849..19893 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0571841	0	0	0	0.0624905	0.0753921	0.141162	0.0494156	0.183627	0.0594111	0.4296	0.234001	0.364519	0.166491	0.393075	0.088043	0.0902412	0	0.0652307	0.170092	0.16593	0.0672365	0.0611277	0.755522	0.337142	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR033467Tesmin/TSO1-like_CXC
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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