TCONS_00042099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042099
Unique NameTCONS_00042099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042099 ID=TCONS_00042099|Name=TCONS_00042099|organism=Clytia hemisphaerica|type=transcript|length=1213bp
GgatttcttggggcaaacggggcaaagtgtggcgagctgtggcaaaatTT
CATATTATAAATATAGAGAATACAGCGATATCCTCATAGTTGgatttctt
ggggcaaacgggGCAAAGTGTGGCGAGTTGTGGCAAAATTTCATATTAAT
TATAGAGCTCGTTATAGAGAATACAGCGATGTTCCCATGGctaaatttct
tggggcaaatggggcaaagtgTGGCGAACTGTGGCAAAATTTCATATTAT
AGAGAATACAGCGATATCCTCATAGTTGgatttcttggggcaaacggggc
aaagtgtggcgagctgtggcaaaatTTCATATTAATTATAGAGCTCGTTA
TAGAGAATACAGCGATGTTCCCATGGctaaatttcttggggcaaatttaa
tttcgcgatttaacaattttggtgtgtttcgcggaatttcttcccttaag
gtaagtaGCCCTTTAGTTGTAGTGTGTCCGATATAGAAGTATCGAGTATA
TCAATACTGTATATATTTCTAAATAGTGTACTAAAATATAAGTCATCTAC
GatgtaattattttgcatttCAGGTCGGGATGATAATCTCAATGAAAATA
ATGCACCAACAAACGCGGATACAatAACGCTGACGCCAGATGCAAAGCAG
AAGTATGAAGAGATGAATACTCCTAATAAACGTATTTACAAGCAgGCATA
CGAAGATATCAAACGAGCCAAACTGATGTTTGAGGAATAGTAGTAGAGAA
GGGAAATTTTACTGGCTTTGAAAAacgattcttttgttttgatttagtgt
ttttattgtttatgtAACAATTTTTGTGttcgaatatttcttttttataa
ctAAAAGAcccaaactaattttttataCACGCTTTTATACAAGATACGGC
TTTGCGGACCATGAAACGTGCGATTCCTTCAATAATTACATCAGAAACGT
GTATGCGTTAGTCTAATTAGCCCTCtcctaaattactaaaatatttttta
taattgatCCCTTGACGGTTGTGGTTGTTATATTAATTAGGTTCAATATC
GATTACATTGGAACCGGAACATTGTccaatttgtttttatttttaagcag
caaaatattttaaaattcatttcaatgtAAATATTAtgttaaacatttaa
aaaggaAAAGAGAAAGATTTTTATTTGTAATTTACACTGTACTGTAATAT
TTGTGAAGCGAAC
Run BLAST on NCBI

protein sequence of TCONS_00042099-protein

>TCONS_00042099-protein ID=TCONS_00042099-protein|Name=TCONS_00042099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
DFLGQTGQSVASCGKISYYKYREYSDILIVGFLGANGAKCGELWQNFILI
IELVIENTAMFPWLNFLGQMGQSVANCGKISYYREYSDILIVGFLGANGA
KCGELWQNFILIIELVIENTAMFPWLNFLGQI
Run BLAST on NCBI

transcript from alignment at sc0003208:2086..3733-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042099 ID=TCONS_00042099|Name=TCONS_00042099|organism=Clytia hemisphaerica|type=transcript|length=1648bp|location=Sequence derived from alignment at sc0003208:2086..3733- (Clytia hemisphaerica)
GGATTTCTTGGGGCAAACGGGGCAAAGTGTGGCGAGCTGTGGCAAAATTT
CATATTATAAATATAGAGAATACAGCGATATCCTCATAGTTGGATTTCTT
GGGGCAAACGGGGCAAAGTGTGGCGAGTTGTGGCAAAATTTCATATTAAT
TATAGAGCTCGTTATAGAGAATACAGCGATGTTCCCATGGCTAAATTTCT
TGGGGCAAATGGGGCAAAGTGTGGCGAACTGTGGCAAAATTTCATATTAT
AGAGAATACAGCGATATCCTCATAGTTGGATTTCTTGGGGCAAACGGGGC
AAAGTGTGGCGAGCTGTGGCAAAATTTCATATTAATTATAGAGCTCGTTA
TAGAGAATACAGCGATGTTCCCATGGCTAAATTTCTTGGGGCAAATTTAA
TTTCGCGATTTAACAATTTTGGTGTGTTTCGCGGAATTTCTTCCCTTAAG
GTAAGTAGCCCTTTAGTTGTAGTGTGTCCGATATAGAAGTATCGAGTATA
TCAATACTGTATATATTTCTAAATAGTGTACTAAAATATAAGTCATCTAC
GATGTAATTATTTTGCATTTCAGGTCGGGATGATAATCTCAATGAAAATA
ATGCACCAACAAACGCGGATACAGTGAGTGTACTTTTAAAATTCTTAAAC
TGGGATTTTTCAAATATTTCTGTAACCCAGTTATAAAAGGCATCTTAAAA
ACTATCCTAAACTTAAAAAAGACAAGCTAAGCCGTACAAATCTCGTACCC
GTACCTTCTCGGTTTGGTTAAAAATTTAGAGTACCTCTCTATTGGGATCA
TTTTTTGTTTTAAGATAACGCTGACGCCAGATGCAAAGCAGAAGTATGAA
GAGATGAATACTCCTAATAAACGTATTTACAAGCAGGTAATTTCGATTTT
TTTTTTATTTGAAAAGCTATTCAAATACCTGCAAGTCTAAGGTAATTTTC
TGAGAAAAAAATCTGTTTAAATTTGTCGTTACTGTTAGATCGGGCTGTTT
CCGTGTATTACGCCATGAATACAGTTGACACTCACTAATTTGATCTTCAA
AGGGAATTGGGGAATTTATTACGAATTTCTAAGGACGATTGACAGTTGAT
GTTGTATGAAATTTACATTGATATTTTTAGGCATACGAAGATATCAAACG
AGCCAAACTGATGTTTGAGGAATAGTAGTAGAGAAGGGAAATTTTACTGG
CTTTGAAAAACGATTCTTTTGTTTTGATTTAGTGTTTTTATTGTTTATGT
AACAATTTTTGTGTTCGAATATTTCTTTTTTATAACTAAAAGACCCAAAC
TAATTTTTTATACACGCTTTTATACAAGATACGGCTTTGCGGACCATGAA
ACGTGCGATTCCTTCAATAATTACATCAGAAACGTGTATGCGTTAGTCTA
ATTAGCCCTCTCCTAAATTACTAAAATATTTTTTATAATTGATCCCTTGA
CGGTTGTGGTTGTTATATTAATTAGGTTCAATATCGATTACATTGGAACC
GGAACATTGTCCAATTTGTTTTTATTTTTAAGCAGCAAAATATTTTAAAA
TTCATTTCAATGTAAATATTATGTTAAACATTTAAAAAGGAAAAGAGAAA
GATTTTTATTTGTAATTTACACTGTACTGTAATATTTGTGAAGCGAAC

Coding sequence (CDS) from alignment at sc0003208:2086..3733-

>TCONS_00042099 ID=TCONS_00042099|Name=TCONS_00042099|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0003208:2086..3733- (Clytia hemisphaerica)
GATTTCTTGGGGCAAACGGGGCAAAGTGTGGCGAGCTGTGGCAAAATTTC
ATATTATAAATATAGAGAATACAGCGATATCCTCATAGTTGGATTTCTTG
GGGCAAACGGGGCAAAGTGTGGCGAGTTGTGGCAAAATTTCATATTAATT
ATAGAGCTCGTTATAGAGAATACAGCGATGTTCCCATGGCTAAATTTCTT
GGGGCAAATGGGGCAAAGTGTGGCGAACTGTGGCAAAATTTCATATTATA
GAGAATACAGCGATATCCTCATAGTTGGATTTCTTGGGGCAAACGGGGCA
AAGTGTGGCGAGCTGTGGCAAAATTTCATATTAATTATAGAGCTCGTTAT
AGAGAATACAGCGATGTTCCCATGGCTAAATTTCTTGGGGCAAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025982XLOC_025982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042099-exon-sc0003208-1575043694:3111..3733TCONS_00042099-exon-sc0003208-1575043694:3111..3733Clytia hemisphaericaexon
TCONS_00042099-exon-sc0003208-1575043694:2848..2919TCONS_00042099-exon-sc0003208-1575043694:2848..2919Clytia hemisphaericaexon
TCONS_00042099-exon-sc0003208-1575043694:2086..2603TCONS_00042099-exon-sc0003208-1575043694:2086..2603Clytia hemisphaericaexon
TCONS_00042099-exon-sc0003208-1510915933:3111..3733TCONS_00042099-exon-sc0003208-1510915933:3111..3733Clytia hemisphaericaexon
TCONS_00042099-exon-sc0003208-1510915933:2848..2919TCONS_00042099-exon-sc0003208-1510915933:2848..2919Clytia hemisphaericaexon
TCONS_00042099-exon-sc0003208-1510915933:2086..2603TCONS_00042099-exon-sc0003208-1510915933:2086..2603Clytia hemisphaericaexon
TCONS_00042099-exon-sc0003208-1491911889:3111..3733TCONS_00042099-exon-sc0003208-1491911889:3111..3733Clytia hemisphaericaexon
TCONS_00042099-exon-sc0003208-1491911889:2848..2919TCONS_00042099-exon-sc0003208-1491911889:2848..2919Clytia hemisphaericaexon
TCONS_00042099-exon-sc0003208-1491911889:2086..2603TCONS_00042099-exon-sc0003208-1491911889:2086..2603Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042099-proteinTCONS_00042099-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003208supercontigsc0003208:2086..3733 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.169598	0.298311	0.0400263	0.29714	1.77381	1.11975	2.06505	2.25652	0.974344	1.1241	0.661059	0.658692	0.448069	0.527704	0.690613	0.622089	0.80261	0.41357	0.364863	0.253243	0.62234	0.541756	0.286552	0.215379	0.425925	0.610021	0.332249	0	0.0465459	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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