TCONS_00042097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042097
Unique NameTCONS_00042097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042097 ID=TCONS_00042097|Name=TCONS_00042097|organism=Clytia hemisphaerica|type=transcript|length=329bp
NTTTAACCTATCTGTATTTCTCAAACTTAGGccagtactctcgggtacct
aatagccgggggtttggaataagaggggggcaTAGTGCGGAAAAGGTCTA
ATCCCCTTCTTGGTaaccccccaacctttaaaaatatctatcccccaagg
gttttgggctaaattttcgAAATTATATAGTGTATAGTGTGATCCGATAA
TCCCCTCAGACTACTCAAACAgaaaaacttcctttcatgcagaccaaatt
cATAACAACGTTGGAAAGAATATCTACAATATACGTAAGCCCCCCCTTCT
TAACCGATCCcccctccttgctatccccc
Run BLAST on NCBI

transcript from alignment at sc0003207:10219..10547

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042097 ID=TCONS_00042097|Name=TCONS_00042097|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at sc0003207:10219..10547 (Clytia hemisphaerica)
gggggatagcaaggaggggGGATCGGTTAAGAAGGGGGGGCTTACGTATA
TTGTAGATATTCTTTCCAACGTTGTTATgaatttggtctgcatgaaagga
agtttttcTGTTTGAGTAGTCTGAGGGGATTATCGGATCACACTATACAC
TATATAATTTcgaaaatttagcccaaaacccttgggggatagatattttt
aaaggttggggggttACCAAGAAGGGGATTAGACCTTTTCCGCACTAtgc
ccccctcttattccaaacccccggctattaggtacccgagagtactggCC
TAAGTTTGAGAAATACAGATAGGTTAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025980XLOC_025980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042097-exon-sc0003207-1491911889:10219..10547TCONS_00042097-exon-sc0003207-1491911889:10219..10547Clytia hemisphaericaexon
TCONS_00042097-exon-sc0003207-1510915933:10219..10547TCONS_00042097-exon-sc0003207-1510915933:10219..10547Clytia hemisphaericaexon
TCONS_00042097-exon-sc0003207-1575043694:10219..10547TCONS_00042097-exon-sc0003207-1575043694:10219..10547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003207supercontigsc0003207:10219..10547 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.591275	0	1.16621	0.468695	3.19367	4.00059	6.98135	6.00783	5.26254	4.00641	6.91585	1.88323	7.18839	2.67942	2.93737	2.41333	0.968311	0	10.8655	5.81922	4.09133	2.7675	1.21733	1.84373	4.06175	5.80782	4.48645	5.13105	2.492	1.54742
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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