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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042095 ID=TCONS_00042095|Name=TCONS_00042095|organism=Clytia hemisphaerica|type=transcript|length=1486bp
TTTTGTGTGATTTCACCAGCGGTATAAGTATTGACGTACTCAGTGATGCA
GGAATGTCTTTGGAGCGAAATATTTCGTTTATTAGTTTGGTGAGGTATTC
ATTGAATGTGTCACTTGATGCGTATTTGTAATGTTCTGGTAACAACTGGA
AAGGGTCACGAGATTTACctgttttaagtttttctatTACTGATGAAACG
TCATGCTGGGTAACGTAAAATTCGTCGGAATCGAGATCTTTTTGAAGTTC
ATGTAGCATATTAACAAGTTCTTCATTCGATGTGGTGTTATCAATGGTGT
CGATTCTTGGTGTATTAAGGAGCTTATCAAAGTGGTCACCGAATTCTTTA
GCAATGTCGATTTTGGTAGATTTGCCATTGATTGTGTATAATTTCTGTTG
CTTTTTCTTAATTAGATTAATTTGAGCCCAGTATGAAGATGGGTTTAAGT
TCTTGAGCTTTTCCACATTAATATAGTGTTCAACTGTTGCTTGGTGCTTT
GCGCGTTTAACGAGTGTTCTGAATATCTTACGTGAGAATTTGTAACGGTT
ATAGGAGATGTCTGAATCGTTTCTAGGGAAGTTGTTTTCTCGCCAAATGT
TAAAGTgtaattgtaaatttttcttgGCTTCAGTTAGTTCGTTGTTCCAC
CAGCGTTTAGCTGGAAATTCGAAGAAGTCTTGTTTAAAAGTTGTGTAGCA
GTCAGATGCCGATGAGTGTAGGATATTCTGTAGGTTATCAAGCATGGTTT
CAGTGTCGATTACATTGTTGATTTTAGTGATGTTTTCTGAAACTTTTTCC
TTGTATAGTTTTACAAATTCACTATTTCTCCACATATGGGTTGGTATATA
GTCATTGGTCAGAGTTTCTGTTTCAAGTTCAGTGGTATGATTGTTTGTTG
AAGGTGGGGATTGTAACGTCAATTTAACAGCTAGGTGGTCGCCTGTATTC
AAGGCATCTGGTTCGGGGATGTGTGAGTCAACAAGTAGATCTAGTAACGA
TTGTGATATAAGGACATGGTCTATATATGACTTGTTGGGAAGTGAAATAT
GGTGGTATGTGTAGTTTGGACCATGACCGTGAGTGATGTCTATTGGAACA
AGGTTATTATCGGCAATAAATCCGGATAGGTAAGGTAAAAGAGCATTGGG
TGGTGTAGTCCTTTGTGTGATAGGTTCATTCGGGCAGCTTTGAAAGTCAC
CAAGGATAATCGATTCAGATGTAGCGGAAAATTGGTTCAAAATACCAGTG
ATAGATGATAGTTGGCTTTTATATGTTTCTATATAGTCTGATTTGTTTAT
CGATTGAAGGTATACTCCTGTGATAACTAATGGTTGATTATTTAGTGAAG
TCTGTATTGTTGTCATGTAGTCCTCTTGGAAAATTGTaactgaattttga
aatttctttttgcgTAAGAATAGCATTGTTCCACCGAAAGGTCTACCGGT
GTTCTGTTTGTTAGCTGGCTGAAAGCAAATATAGAA Run BLAST on NCBI protein sequence of TCONS_00042095-protein >TCONS_00042095-protein ID=TCONS_00042095-protein|Name=TCONS_00042095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
FYICFQPANKQNTGRPFGGTMLFLRKKKFQNSVTIFQEDYMTTIQTSLNN
QPLVITGVYLQSINKSDYIETYKSQLSSITGILNQFSATSESIILGDFQS
CPNEPITQRTTPPNALLPYLSGFIADNNLVPIDITHGHGPNYTYHHISLP
NKSYIDHVLISQSLLDLLVDSHIPEPDALNTGDHLAVKLTLQSPPSTNNH
TTELETETLTNDYIPTHMWRNSEFVKLYKEKVSENITKINNVIDTETMLD
NLQNILHSSASDCYTTFKQDFFEFPAKRWWNNELTEAKKNLQLHFNIWRE
NNFPRNDSDISYNRYKFSRKIFRTLVKRAKHQATVEHYINVEKLKNLNPS
SYWAQINLIKKKQQKLYTINGKSTKIDIAKEFGDHFDKLLNTPRIDTIDN
TTSNEELVNMLHELQKDLDSDEFYVTQHDVSSVIEKLKTGKSRDPFQLLP
EHYKYASSDTFNEYLTKLINEIFRSKDIPASLSTSILIPLVKSHK Run BLAST on NCBI transcript from alignment at sc0003207:54..1539 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042095 ID=TCONS_00042095|Name=TCONS_00042095|organism=Clytia hemisphaerica|type=transcript|length=1486bp|location=Sequence derived from alignment at sc0003207:54..1539 (Clytia hemisphaerica)
TTCTATATTTGCTTTCAGCCAGCTAACAAACAGAACACCGGTAGACCTTT
CGGTGGAACAATGCTATTCTTAcgcaaaaagaaatttcaaaattcagttA
CAATTTTCCAAGAGGACTACATGACAACAATACAGACTTCACTAAATAAT
CAACCATTAGTTATCACAGGAGTATACCTTCAATCGATAAACAAATCAGA
CTATATAGAAACATATAAAAGCCAACTATCATCTATCACTGGTATTTTGA
ACCAATTTTCCGCTACATCTGAATCGATTATCCTTGGTGACTTTCAAAGC
TGCCCGAATGAACCTATCACACAAAGGACTACACCACCCAATGCTCTTTT
ACCTTACCTATCCGGATTTATTGCCGATAATAACCTTGTTCCAATAGACA
TCACTCACGGTCATGGTCCAAACTACACATACCACCATATTTCACTTCCC
AACAAGTCATATATAGACCATGTCCTTATATCACAATCGTTACTAGATCT
ACTTGTTGACTCACACATCCCCGAACCAGATGCCTTGAATACAGGCGACC
ACCTAGCTGTTAAATTGACGTTACAATCCCCACCTTCAACAAACAATCAT
ACCACTGAACTTGAAACAGAAACTCTGACCAATGACTATATACCAACCCA
TATGTGGAGAAATAGTGAATTTGTAAAACTATACAAGGAAAAAGTTTCAG
AAAACATCACTAAAATCAACAATGTAATCGACACTGAAACCATGCTTGAT
AACCTACAGAATATCCTACACTCATCGGCATCTGACTGCTACACAACTTT
TAAACAAGACTTCTTCGAATTTCCAGCTAAACGCTGGTGGAACAACGAAC
TAACTGAAGCcaagaaaaatttacaattacACTTTAACATTTGGCGAGAA
AACAACTTCCCTAGAAACGATTCAGACATCTCCTATAACCGTTACAAATT
CTCACGTAAGATATTCAGAACACTCGTTAAACGCGCAAAGCACCAAGCAA
CAGTTGAACACTATATTAATGTGGAAAAGCTCAAGAACTTAAACCCATCT
TCATACTGGGCTCAAATTAATCTAATTAAGAAAAAGCAACAGAAATTATA
CACAATCAATGGCAAATCTACCAAAATCGACATTGCTAAAGAATTCGGTG
ACCACTTTGATAAGCTCCTTAATACACCAAGAATCGACACCATTGATAAC
ACCACATCGAATGAAGAACTTGTTAATATGCTACATGAACTTCAAAAAGA
TCTCGATTCCGACGAATTTTACGTTACCCAGCATGACGTTTCATCAGTAa
tagaaaaacttaaaacagGTAAATCTCGTGACCCTTTCCAGTTGTTACCA
GAACATTACAAATACGCATCAAGTGACACATTCAATGAATACCTCACCAA
ACTAATAAACGAAATATTTCGCTCCAAAGACATTCCTGCATCACTGAGTA
CGTCAATACTTATACCGCTGGTGAAATCACACAAAA Coding sequence (CDS) from alignment at sc0003207:54..1539 >TCONS_00042095 ID=TCONS_00042095|Name=TCONS_00042095|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at sc0003207:54..1539 (Clytia hemisphaerica)
TTCTATATTTGCTTTCAGCCAGCTAACAAACAGAACACCGGTAGACCTTT
CGGTGGAACAATGCTATTCTTAcgcaaaaagaaatttcaaaattcagttA
CAATTTTCCAAGAGGACTACATGACAACAATACAGACTTCACTAAATAAT
CAACCATTAGTTATCACAGGAGTATACCTTCAATCGATAAACAAATCAGA
CTATATAGAAACATATAAAAGCCAACTATCATCTATCACTGGTATTTTGA
ACCAATTTTCCGCTACATCTGAATCGATTATCCTTGGTGACTTTCAAAGC
TGCCCGAATGAACCTATCACACAAAGGACTACACCACCCAATGCTCTTTT
ACCTTACCTATCCGGATTTATTGCCGATAATAACCTTGTTCCAATAGACA
TCACTCACGGTCATGGTCCAAACTACACATACCACCATATTTCACTTCCC
AACAAGTCATATATAGACCATGTCCTTATATCACAATCGTTACTAGATCT
ACTTGTTGACTCACACATCCCCGAACCAGATGCCTTGAATACAGGCGACC
ACCTAGCTGTTAAATTGACGTTACAATCCCCACCTTCAACAAACAATCAT
ACCACTGAACTTGAAACAGAAACTCTGACCAATGACTATATACCAACCCA
TATGTGGAGAAATAGTGAATTTGTAAAACTATACAAGGAAAAAGTTTCAG
AAAACATCACTAAAATCAACAATGTAATCGACACTGAAACCATGCTTGAT
AACCTACAGAATATCCTACACTCATCGGCATCTGACTGCTACACAACTTT
TAAACAAGACTTCTTCGAATTTCCAGCTAAACGCTGGTGGAACAACGAAC
TAACTGAAGCcaagaaaaatttacaattacACTTTAACATTTGGCGAGAA
AACAACTTCCCTAGAAACGATTCAGACATCTCCTATAACCGTTACAAATT
CTCACGTAAGATATTCAGAACACTCGTTAAACGCGCAAAGCACCAAGCAA
CAGTTGAACACTATATTAATGTGGAAAAGCTCAAGAACTTAAACCCATCT
TCATACTGGGCTCAAATTAATCTAATTAAGAAAAAGCAACAGAAATTATA
CACAATCAATGGCAAATCTACCAAAATCGACATTGCTAAAGAATTCGGTG
ACCACTTTGATAAGCTCCTTAATACACCAAGAATCGACACCATTGATAAC
ACCACATCGAATGAAGAACTTGTTAATATGCTACATGAACTTCAAAAAGA
TCTCGATTCCGACGAATTTTACGTTACCCAGCATGACGTTTCATCAGTAa
tagaaaaacttaaaacagGTAAATCTCGTGACCCTTTCCAGTTGTTACCA
GAACATTACAAATACGCATCAAGTGACACATTCAATGAATACCTCACCAA
ACTAATAAACGAAATATTTCGCTCCAAAGACATTCCTGCATCACTGAGTA
CGTCAATACTTATACCGCTGGTGAAATCACACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042095-exon-sc0003207-1491911889:54..1539 | TCONS_00042095-exon-sc0003207-1491911889:54..1539 | Clytia hemisphaerica | exon |
| TCONS_00042095-exon-sc0003207-1510915933:54..1539 | TCONS_00042095-exon-sc0003207-1510915933:54..1539 | Clytia hemisphaerica | exon |
| TCONS_00042095-exon-sc0003207-1575043694:54..1539 | TCONS_00042095-exon-sc0003207-1575043694:54..1539 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003207 | supercontig | sc0003207:54..1539 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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