TCONS_00042092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042092
Unique NameTCONS_00042092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042092 ID=TCONS_00042092|Name=TCONS_00042092|organism=Clytia hemisphaerica|type=transcript|length=630bp
gtcaaaatcaaaacaatcattaaATCTGACATCTTTCTCAAAGAACTTGT
CCCATCATATCAAACCCCAAAACAACTTGACAATCGTTTCATAGCTCATT
GACCGGTTAATTTATAACAATTCTGAATAAAAAGTACATAACCATAACAC
TGGATAACAGGCCCCTATCCCCAACTCTCAAAAGGCTAAATGAAGCAGCA
CAACGACCGACAATCACAACTCCAGAAACGATGACAAGTGTCACTCCAGC
CACAAATCACTCAGAATGCAGGAAAATCTTTTAAGCCTTGAACGAAATTC
TAGTGCCAGAAATTATCTTGATTCAAGACAGACACGActcctcaaaacaa
aaagcaaaagGAACAACAAAAGCCAGCAGAAGAAGCAAAAAATCAAGTCA
AAGATTGGATTTAAAGTGCCACATATTCAGGTGAATACTGATAAAACTTG
CCTCAATAACTTTACCAGCCTTTTAAGACTATCTAAATCCAGACGAAAAG
AGAAAACAATACAAAGATTCATACCGAAAAGTAAAGGAGGGGTGGCAGTG
AGAGTTGATGGACGTTTTTACTCGTAGCGAGGCTACCATTATTGTTGTTG
ATCGCTCCTGTGAGGGCGTTTGAGGCGGTA
Run BLAST on NCBI

protein sequence of TCONS_00042092-protein

>TCONS_00042092-protein ID=TCONS_00042092-protein|Name=TCONS_00042092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MQENLLSLERNSSARNYLDSRQTRLLKTKSKRNNKSQQKKQKIKSKIGFK
VPHIQVNTDKTCLNNFTSLLRLSKSRRKEKTIQRFIPKSKGGVAVRVDGR
FYS
Run BLAST on NCBI

transcript from alignment at sc0003203:12841..13470

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042092 ID=TCONS_00042092|Name=TCONS_00042092|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at sc0003203:12841..13470 (Clytia hemisphaerica)
TACCGCCTCAAACGCCCTCACAGGAGCGATCAACAACAATAATGGTAGCC
TCGCTACGAGTAAAAACGTCCATCAACTCTCACTGCCACCCCTCCTTTAC
TTTTCGGTATGAATCTTTGTATTGTTTTCTCTTTTCGTCTGGATTTAGAT
AGTCTTAAAAGGCTGGTAAAGTTATTGAGGCAAGTTTTATCAGTATTCAC
CTGAATATGTGGCACTTTAAATCCAATCTTTGACTTGATTTTTTGCTTCT
TCTGCTGGCTTTTGTTGTTCcttttgctttttgttttgaggagTCGTGTC
TGTCTTGAATCAAGATAATTTCTGGCACTAGAATTTCGTTCAAGGCTTAA
AAGATTTTCCTGCATTCTGAGTGATTTGTGGCTGGAGTGACACTTGTCAT
CGTTTCTGGAGTTGTGATTGTCGGTCGTTGTGCTGCTTCATTTAGCCTTT
TGAGAGTTGGGGATAGGGGCCTGTTATCCAGTGTTATGGTTATGTACTTT
TTATTCAGAATTGTTATAAATTAACCGGTCAATGAGCTATGAAACGATTG
TCAAGTTGTTTTGGGGTTTGATATGATGGGACAAGTTCTTTGAGAAAGAT
GTCAGATttaatgattgttttgattttgac

Coding sequence (CDS) from alignment at sc0003203:12841..13470

>TCONS_00042092 ID=TCONS_00042092|Name=TCONS_00042092|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0003203:12841..13470 (Clytia hemisphaerica)
CTACGAGTAAAAACGTCCATCAACTCTCACTGCCACCCCTCCTTTACTTT
TCGGTATGAATCTTTGTATTGTTTTCTCTTTTCGTCTGGATTTAGATAGT
CTTAAAAGGCTGGTAAAGTTATTGAGGCAAGTTTTATCAGTATTCACCTG
AATATGTGGCACTTTAAATCCAATCTTTGACTTGATTTTTTGCTTCTTCT
GCTGGCTTTTGTTGTTCcttttgctttttgttttgaggagTCGTGTCTGT
CTTGAATCAAGATAATTTCTGGCACTAGAATTTCGTTCAAGGCTTAAAAG
ATTTTCCTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025975XLOC_025975Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042092-proteinTCONS_00042092-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042092-exon-sc0003203-1491911889:12841..13470TCONS_00042092-exon-sc0003203-1491911889:12841..13470Clytia hemisphaericaexon
TCONS_00042092-exon-sc0003203-1510915933:12841..13470TCONS_00042092-exon-sc0003203-1510915933:12841..13470Clytia hemisphaericaexon
TCONS_00042092-exon-sc0003203-1575043694:12841..13470TCONS_00042092-exon-sc0003203-1575043694:12841..13470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003203supercontigsc0003203:12841..13470 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.27113	3.17392	2.68772	1.79811	11.8427	7.31239	9.62983	10.7363	9.92364	7.65043	14.6488	9.5287	7.1094	9.20592	0.368094	0.688644	1.60945	0.559356	0	0.975872	1.02679	1.24677	1.43883	1.80964	15.9525	16.8073	1.40318	0	1.10955	1.21648
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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