TCONS_00042091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042091
Unique NameTCONS_00042091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042091 ID=TCONS_00042091|Name=TCONS_00042091|organism=Clytia hemisphaerica|type=transcript|length=270bp
NTTGGTTTCATCGCCTACTGAAGAAACTGGCACTGTTGATGGAATTGTAA
AGTTTGGGCGAGCCGTTGGATTCAACGCTGGTTGTTGACACGTGTAGCAG
ATATAGcgacaaaatggctgaaatggTGGTCGTTGTTCGTTATTCAGATG
ATGAACGATTGAAGTGTGATCAATTGAGACTGAGCTGAACTGCGCTGAAA
GGGGCTTGACGGTAGGATATATATAGGCGAAGGAAAGAATAACCGGCAGC
CGAAATATACTATTTCATAG
Run BLAST on NCBI

transcript from alignment at sc0003203:12362..12631

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042091 ID=TCONS_00042091|Name=TCONS_00042091|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at sc0003203:12362..12631 (Clytia hemisphaerica)
CTATGAAATAGTATATTTCGGCTGCCGGTTATTCTTTCCTTCGCCTATAT
ATATCCTACCGTCAAGCCCCTTTCAGCGCAGTTCAGCTCAGTCTCAATTG
ATCACACTTCAATCGTTCATCATCTGAATAACGAACAACGACCAccattt
cagccattttgtcgCTATATCTGCTACACGTGTCAACAACCAGCGTTGAA
TCCAACGGCTCGCCCAAACTTTACAATTCCATCAACAGTGCCAGTTTCTT
CAGTAGGCGATGAAACCAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025974XLOC_025974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042091-exon-sc0003203-1491911889:12362..12631TCONS_00042091-exon-sc0003203-1491911889:12362..12631Clytia hemisphaericaexon
TCONS_00042091-exon-sc0003203-1510915933:12362..12631TCONS_00042091-exon-sc0003203-1510915933:12362..12631Clytia hemisphaericaexon
TCONS_00042091-exon-sc0003203-1575043694:12362..12631TCONS_00042091-exon-sc0003203-1575043694:12362..12631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003203supercontigsc0003203:12362..12631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.0789	25.9086	9.36063	14.3638	36.3218	34.3697	16.8928	20.0068	16.1886	9.93225	11.5687	13.9472	16.8093	12.6176	2.10658	4.9709	7.99362	5.21447	1.80733	4.23943	3.95258	4.70996	7.20483	10.5398	33.2254	27.0627	7.03	5.82859	12.2456	3.4982
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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