TCONS_00042089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042089
Unique NameTCONS_00042089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1154

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042089 ID=TCONS_00042089|Name=TCONS_00042089|organism=Clytia hemisphaerica|type=transcript|length=1154bp
CCTACAAAGAAGGACAATTTGAAAACCTTAACAACATTGGATTAGTCAAc
aAAAAGTCCAGTATTCGACCAGCAAAAACGCTTTCAACCAAGCAGCAAGA
TGTCTTTGGGTGCTGGAAATAAAGAAGGCTTTCAACCAAGCAGCAAGATG
TCTCTGGGTGCTGGAAATAAAGAAGGTGGCTCTTGTACAAATTGCAGAAA
GATGCAAAGACAGCTTCAATTAGCAAACGAAAAGCTTAAAGAATACGAGT
CAACTTTCAGTAATTTGGGCAGGCTAGTTCCTGATTTAGTGACAGTCACG
CAACAAATCAGCCATTCCTTCCCAAATGGCAAAAAAACCACAATTATTCC
TGAGAGTATGACCCTTGACCAGCATGAGGAAGTGCTTCCTGGAACAGACC
AAATGAACTCAACTCCTGTAATGACAGACAGAAGTATGAACTTTGAGAGT
AGTCCAATAACAACCgacagaaaacaaaaaaaaacattagacgTCAGCAC
CGGTTATCTTAGCAATTCAGATATGCAGCAAGAAATGATACTCCCAATGA
CTAACCATGTTAAGTTGACGGTGGCAGAAATAAAGGTGTTGAAAAGGAAG
AGcgacaaatatcaaaaatggacACCGGTTTTCAATACCATCGTCAAGAA
ATACTTTGACGAGAAAACTTTGAGGAAGTCGTCAGCACAAGGCAAGGAAA
ACAAAAAGACTAGAAAGTCAAAGCCAgcattgaatgaaaaaattgttGCT
GATCTTTTAGGTAAGTAGAATAAGACTTCTTTATCTTTCTTCATATTACC
AtacttattttggcaaaattggagAGCGAactcaaaatttgccaaattta
gttcccactgaaattattttttaggtcatttgccaaattaagttcttgcc
aaaatcaaaaaattcctggtttgccaaaataagttctcgccaaaagaGAA
AAATTAGAATCGGTCGTttgtcaaaattagttctcaccaaaaaaagttcc
ctgaAGGTTAAAGGGaatagcgctatacttatagtaggggtcaGAGTTGC
TGGTacttccatggtatactctgaaatacatgctgatgtcagcctgaaag
ctgattggcttaaccgACAGTTTTACGTGGTTTGAGAGtatagctaaaac
tttg
Run BLAST on NCBI

transcript from alignment at sc0003203:2044..6739+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042089 ID=TCONS_00042089|Name=TCONS_00042089|organism=Clytia hemisphaerica|type=transcript|length=4696bp|location=Sequence derived from alignment at sc0003203:2044..6739+ (Clytia hemisphaerica)
CCTACAAAGAAGGACAATTTGAAAACCTTAACAACATTGGATTAGTCAAG
TGAGTCTGCCTTTCACATACATTGCTgattaaaagttacaaatttagaga
ttagttttcaagagaaaccTTTGAAAAGTAATGGTGATCTCTAACCTAGT
TTCAAAAGTCCATTCAATTAGGTTAAACTTAATAGCTGATGTTTTCAATG
ATAGTGCTAGTGTATTAAAATGGTGCCTAGTCAATTTATACtttgaatta
aaattaaaattttctactttttactTTCAGCAAAAAGTCCAGTATTCGAC
CAGCAAAAGCGTTAGCTatattttaatttgaattaaTTCCTAACCTACCC
GTATGAtttcaaaagcttaaaaaaattttgaagggttttGTTCACTTCAT
GCAAATTAGTACGAGAAAGCAATACAATTGTTGCATATTGCCAACAGAAA
ATATCtgacattttttctttcttctctaAAGCCAAATCTGACTTTTAAAA
ATTAGGTCCCTGAACATAAAAGCAAAAAACCCTGGTGCTTCCTGGAGTGA
GTAGTGTATCTATTAAAGTTGGCTAAGTGATAAATTTAGGAGAGAAATTT
TCATAAAGTgagaatatctaaaataactaaaataaactttttttacgaaa
acaacgaggctgaaaaattcttaaagTGGAGCCTGTAATGACTGAGTTTA
AAGTAAACTTAGGATCAAATTGGtggaaaattagatttttaacCCAACAT
ACATCTGTTTTCAAAGGGTTAAAAACCGCACCAGCAGCAAGAAAAAATTA
CTCGACTGTCTATAAGAAACTGAAAACTTTGTTACTTTCTATATAGATGA
ACTCAACTCCTGTAATGACGGACAGAAGTATGAACTTTGAGAGTAGTCCA
ATAACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtttcaacttttttctttcagcaAAAAGTCCAGTATTCGACC
AGCAAAAACGTTAGCTatattttaatttgaattaaTTCCTAACCTACCCG
TATGATTTCAGaagcataaattttttttgaagggtTTTGTTTGCTTCATG
CAAATAAGTACGAGAAAGCAATACAATTGTTGCATATTGCCAACAGAAAA
TATCTgacattttttctttctctaaaGCCAAatctgcattttaaaaatta
gGTCCCTGAacataaaagcaaaaaaacCATAGTTATAAAAATTGTCCTAC
CTGTTTCAATTCAGGCTTTCAACCAAGCAGCAAGATGTCTTTGGGTGCTG
GAAATAAAGAAGGTGAGATATATTTCTAATTGAGGCTGCGTGAGACTTTT
GAGTTAATTTAGTATCATAATAAATAAGTGTTTAACGTTAGCTatatttt
aatttgaattaaTTCCTAACCTACCCGTATGATTTCAGAAgcttaaaaat
tttttgaagggtTTTGTTCGCTTCATGCAAATTAGTATGAGAAAGCAATA
CAATTGTTGCATATTGCCAACAGAAAATATCtgacattttttctttcttc
tctaAAGCCAAATCTGTATTTAAAAATTAGGTCCCTGAacataaaagcaa
aaaaacCATAGCAATAAAAATTGTCCTACCTGTTTCAATTCAGGCTTTCA
ACCAAGCAGCAAGATGTCTCTGGGTGCTGGAAATAAAGAAGGTGAGATAT
ATTTCTAATTGAGGCTGCGTGAGACTTTCGAGTTAATTTAGTATCATAAT
AAATAAGTGCTTAGTCGATTAAGTTGTTGTCTTcctttatttatttcatt
acAATGTTAGAATCAGTGAGTAACACAGAAACCTCTCTTAGGTGGCTCTT
GTACAAATTGCAGAAAGATGCAAAGACAGCTTCAATTAGCAAACGAAAAG
CTTAAAGAATACGGTGAGATTATAAACTTTCCAATTCTGctctaaaacaa
aattgttTGGaaaccaaaaactgagcctgtgTATGCTCATAACATAACAT
TTAtatagaaaaaaacatgtagcctGTGAATAAATAGGACATGGGGAAAT
CTGTGACCATTTTACTCTTTAAAGACCCTAGATACCTCCACACAACACCC
AGCCTTGTTGTTCACCATAACCTCTTTTCTCTTAGAGTCAACTTTCAGTA
ATTTGGGCAGGCTAGTTCCTGATTTAGTGACAGTCACGCAACAAATCAGC
CATTCCTTCCCAAATGGCAAAAAAACCACAGTAAGTTGAATTTGCCACTA
TATACTCACATCTTATTAATAACTCAATCAAAATGCACTTGTAAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTCTTTAAAGACC
CTAGATACCTCCACACAACACCCAGCCTTGTTGTTCACCATAACCTCTTT
TCTCTTAGAGTCAACTTTCAGTAATTTGGGCAGGCTAGTTCCTGATTTAG
TGACAGTCACGCAACAAATCAGCCATTCCTTCCCAAATGGCAAAAAAACC
ACAGTAAGTTGAATTTGCCACTATATACTCACATCTTATTAATAACTCAA
TTAAAATGCACTTgtaaataataattaaaaaaaacaccgtTATCAAATTA
GGAAATTCAGCTCATACCCTGTCAAGAAAAAAGCTTTAATGAAAGCAAGT
TTTATAAGGACTTGTAAGAATAAGAATATCCTTTTCTCATAGATTATTCC
TGAGAGTATGACCCTTGACCAGCATGAGGAAGTGCTTCCTGGAACAGACC
AAGTGAGTAGTGTATCTATTAAAGTTGGTTAAGTGATAAATTTAGGAGAG
AAATTTTCATAAAGTgagaatatctaaaataaactTTCTTTACGAAAACA
ACGAggctgaaaaattcttaaagTGGAGCCTGTAATGGCTGAGTTCAAAG
TATACTTAGGATTAAATTGGTGGAAAATTAGAGTTTTAACCCTACATACA
TCTGTttttaaagggttaaaaacaGCACCAGCAGCAAGAAAAAATTACTT
GAATGTGTATATAAGAAACTGAAAACTTTGTTATTTTCTATATAGATGAA
CTCAACTCCTGTAATGACAGACAGAAGTATGAACTTTGAGAGTAGTCCAA
TAACAACCgacagaaaacaaaaaaaaacattagacgTCAGCACCGGTTAT
CTTAGCAATTCAGATATGCAGGTAGGTACCAGTAAAAGTTCATTTCTCAC
GAAAATATTAGATCCTCCTTAAGTACcttgatttgattaaaaaattttaa
aacctttGGATTTGTGAAATTCGCAAAATATAATACTTGCGAAAAATTTA
AGATCATGATATTTGCCTGAACCCCTAcgaaaatgaaagatatttggTCA
AAAAGGGGCTGATttgtgaaattttaatttttatatctctcgcgaaaata
agttcccgcaaaaattaatccccttaaggtatCTCAAACACTTACCGGAA
CCATGCACTCAGTCTAACTAcagttttattttcataattttacaaaCCTT
TAGCAAGAAATGATACTCCCAATGACTAACCATGTTAAGTTGACGGTGGC
AGAAATAAAGGTGTTGAAAAGGAAGAGcgacaaatatcaaaaatggacAC
CGGTTTTCAATACCATCGTCAAGAAATACTTTGACGAGAAAACTTTGAGG
AAGTAAGAAAACAATTTCTTCTTTGTAAAAAATAGACTCTTCCAGTTTAA
CTCTGTTACAAGTCAAACAAGGAAACATTTATTCTTGTTTTTTGtcacat
tgggccattccagaaaatttttgttacctgGCTTCAGACGATATGCCTCT
ATTAATATTTTCTAGCTTCGGAATTagtaaaacaaagaaagcgctAAATG
TTCCACTTAAAACTTTAAGGTCGTCAGCACAAGGCAAGGAAAACAAAAAG
ACTAGAAAGTCAAAGCCAgcattgaatgaaaaaattgttGCTGATCTTTT
AGGTAAGTAGAATAAGACTTCTTTATCTTTCTTCATATTACCAtacttat
tttggcaaaattggagAGCGAactcaaaatttgccaaatttagttcccac
tgaaattattttttaggtcatttgccaaattaagttcttgccaaaatcaa
aaaattcctggtttgccaaaataagttctcgccaaaagaGAAAAATTAGA
ATCGGTCGTttgtcaaaattagttctcaccaaaaaaagttccctgaAGGT
TAAAGGGaatagcgctatacttatagtaggggtcaGAGTTGCTGGTactt
ccatggtatactctgaaatacatgctgatgtcagcctgaaagctgattgg
cttaaccgACAGTTTTACGTGGTTTGAGAGtatagctaaaactttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025972XLOC_025972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042089-exon-sc0003203-1491911889:2044..2092TCONS_00042089-exon-sc0003203-1491911889:2044..2092Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1510915933:2044..2092TCONS_00042089-exon-sc0003203-1510915933:2044..2092Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1575043694:2044..2092TCONS_00042089-exon-sc0003203-1575043694:2044..2092Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1491911889:3023..3052TCONS_00042089-exon-sc0003203-1491911889:3023..3052Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1510915933:3023..3052TCONS_00042089-exon-sc0003203-1510915933:3023..3052Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1575043694:3023..3052TCONS_00042089-exon-sc0003203-1575043694:3023..3052Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1491911889:3308..3355TCONS_00042089-exon-sc0003203-1491911889:3308..3355Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1510915933:3308..3355TCONS_00042089-exon-sc0003203-1510915933:3308..3355Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1575043694:3308..3355TCONS_00042089-exon-sc0003203-1575043694:3308..3355Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1491911889:3687..3734TCONS_00042089-exon-sc0003203-1491911889:3687..3734Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1510915933:3687..3734TCONS_00042089-exon-sc0003203-1510915933:3687..3734Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1575043694:3687..3734TCONS_00042089-exon-sc0003203-1575043694:3687..3734Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1491911889:3885..3956TCONS_00042089-exon-sc0003203-1491911889:3885..3956Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1510915933:3885..3956TCONS_00042089-exon-sc0003203-1510915933:3885..3956Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1575043694:3885..3956TCONS_00042089-exon-sc0003203-1575043694:3885..3956Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1491911889:4179..4273TCONS_00042089-exon-sc0003203-1491911889:4179..4273Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1510915933:4179..4273TCONS_00042089-exon-sc0003203-1510915933:4179..4273Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1575043694:4179..4273TCONS_00042089-exon-sc0003203-1575043694:4179..4273Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1491911889:5086..5145TCONS_00042089-exon-sc0003203-1491911889:5086..5145Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1510915933:5086..5145TCONS_00042089-exon-sc0003203-1510915933:5086..5145Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1575043694:5086..5145TCONS_00042089-exon-sc0003203-1575043694:5086..5145Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1491911889:5439..5564TCONS_00042089-exon-sc0003203-1491911889:5439..5564Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1510915933:5439..5564TCONS_00042089-exon-sc0003203-1510915933:5439..5564Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1575043694:5439..5564TCONS_00042089-exon-sc0003203-1575043694:5439..5564Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1491911889:5897..6045TCONS_00042089-exon-sc0003203-1491911889:5897..6045Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1510915933:5897..6045TCONS_00042089-exon-sc0003203-1510915933:5897..6045Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1575043694:5897..6045TCONS_00042089-exon-sc0003203-1575043694:5897..6045Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1491911889:6263..6739TCONS_00042089-exon-sc0003203-1491911889:6263..6739Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1510915933:6263..6739TCONS_00042089-exon-sc0003203-1510915933:6263..6739Clytia hemisphaericaexon
TCONS_00042089-exon-sc0003203-1575043694:6263..6739TCONS_00042089-exon-sc0003203-1575043694:6263..6739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003203supercontigsc0003203:2044..6739 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.038927	0	0.0233561	0.0877967	0.193559	0.136167	0.21059	0.29506	0.16787	0.231369	0.0820071	0.275538	0.229643	0.301692	0.205318	0.309044	0.0238656	0.135761	0.0199543	0.0417615	0.243965	0.114994	0.0947126	0.0782694	2.08169	1.84353	0.108673	0.174343	0.0416113	0.0543255
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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