TCONS_00042082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042082
Unique NameTCONS_00042082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042082 ID=TCONS_00042082|Name=TCONS_00042082|organism=Clytia hemisphaerica|type=transcript|length=254bp
attttctccattttgagatttttgcccTAGAAAATGGCTCAAACTTTGTC
GCGCGGTTCAAAAACCTGgttttgagccatgttttttagACAACGGGTTA
TCTGTATGTTATGATTCTtacatttttctgttaaaagttGTACATTTTTT
CAGATTATCAAATTGAGAATATTGTTTCTGTTATCATTCAAGCACAATTT
GAGGTCAAAATCcctatttagccaaatttgagattttttgttgGCGGAGA
CCgc
Run BLAST on NCBI

transcript from alignment at sc0003196:1147..1400

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042082 ID=TCONS_00042082|Name=TCONS_00042082|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at sc0003196:1147..1400 (Clytia hemisphaerica)
gcGGTCTCCGCcaacaaaaaatctcaaatttggctaaataggGATTTTGA
CCTCAAATTGTGCTTGAATGATAACAGAAACAATATTCTCAATTTGATAA
TCTGAAAAAATGTACaacttttaacagaaaaatgtaAGAATCATAACATA
CAGATAACCCGTTGTctaaaaaacatggctcaaaacCAGGTTTTTGAACC
GCGCGACAAAGTTTGAGCCATTTTCTAgggcaaaaatctcaaaatggaga
aaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025967XLOC_025967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042082-exon-sc0003196-1491911889:1147..1400TCONS_00042082-exon-sc0003196-1491911889:1147..1400Clytia hemisphaericaexon
TCONS_00042082-exon-sc0003196-1510915933:1147..1400TCONS_00042082-exon-sc0003196-1510915933:1147..1400Clytia hemisphaericaexon
TCONS_00042082-exon-sc0003196-1575043694:1147..1400TCONS_00042082-exon-sc0003196-1575043694:1147..1400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003196supercontigsc0003196:1147..1400 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.59974	2.06096	3.19951	4.78505	4.85445	3.06884	0.925606	0.866541	0	0	0	1.43844	1.43644	0	0.81762	1.31615	0	1.66187	4.59192	1.50073	2.78434	5.0929	0	3.75239	0	2.06959	0.987191	0	4.72639	1.43194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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