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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042075 ID=TCONS_00042075|Name=TCONS_00042075|organism=Clytia hemisphaerica|type=transcript|length=858bp
ATTGGCGGTTCCGAACAATCTTCTATGATAATCTGTATATAAACTATTGA
AATCTCTCCTCCGTGGCATTTGTGAGCTGTCCGCCAGTTTCAGGTGGAAA
TCTAGGTCATCTATACTCTTTGACTTGAGGTCTTGCATCATCTCACGATA
TGCTAATCCAGGGGTATatcctttttgaaaaagttcatGTATCGTCTTTG
AAACGTGGTCAGGAATATCTTTGAAGCTCAAACTTTGTAATGATTTTGTC
GAATGGCTATGTGAATACTCGATATTGATTTGAGCGGGGTATTTTGCAGA
TTCATCACGGAAAATACGAATTGACATTGAAAAGGGACAATCAGCATTTC
GAAATCTTTTAGATGGATCGGCCTTTAACACCTGTATATGGTTCATTGTG
GGTGGATGGTGTGTACGATGATGGCaacgaaaataatgaattttatgGTA
TTGAGATTTACTTTTATTTCCAAGAACTTTTGCTGTGCGGGCTCTTATTG
TTTCATCCGTCTTTTTGCAATATTCTTCGATGAAATTTTTGACATCACCA
TCATTTTTAAGGGAACAGCCTATCGTTGTTTTGAAAGCATTGGTTGTACC
CTTAACAGAAATGATTTCATATGTGTTCTCTGATGATTGAAAAGGTAAGA
TCTCCTTGACACATGCTATCAATTCTTCTGTGTCAGAGATCTTTTCGTTG
AAAATGGTTTTCCAATCTTCAAATACATCTGGAGACGAAGCTGCCatgtt
tgtttgtaattttaatGCTGACGCATCTTTTGAATATCACGGCAATCGAA
AATGATAATTCGGACCATCAATGATAATTCAGACTATCAAAGATAATGCG
AACGATCA Run BLAST on NCBI protein sequence of TCONS_00042075-protein >TCONS_00042075-protein ID=TCONS_00042075-protein|Name=TCONS_00042075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MAASSPDVFEDWKTIFNEKISDTEELIACVKEILPFQSSENTYEIISVKG
TTNAFKTTIGCSLKNDGDVKNFIEEYCKKTDETIRARTAKVLGNKSKSQY
HKIHYFRCHHRTHHPPTMNHIQVLKADPSKRFRNADCPFSMSIRIFRDES
AKYPAQINIEYSHSHSTKSLQSLSFKDIPDHVSKTIHELFQKGYTPGLAY
REMMQDLKSKSIDDLDFHLKLADSSQMPRRRDFNSLYTDYHRRLFGTAN Run BLAST on NCBI transcript from alignment at sc0003193:3614..4471 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042075 ID=TCONS_00042075|Name=TCONS_00042075|organism=Clytia hemisphaerica|type=transcript|length=858bp|location=Sequence derived from alignment at sc0003193:3614..4471 (Clytia hemisphaerica)
TGATCGTTCGCATTATCTTTGATAGTCTGAATTATCATTGATGGTCCGAA
TTATCATTTTCGATTGCCGTGATATTCAAAAGATGCGTCAGCattaaaat
tacaaacaaacatGGCAGCTTCGTCTCCAGATGTATTTGAAGATTGGAAA
ACCATTTTCAACGAAAAGATCTCTGACACAGAAGAATTGATAGCATGTGT
CAAGGAGATCTTACCTTTTCAATCATCAGAGAACACATATGAAATCATTT
CTGTTAAGGGTACAACCAATGCTTTCAAAACAACGATAGGCTGTTCCCTT
AAAAATGATGGTGATGTCAAAAATTTCATCGAAGAATATTGCAAAAAGAC
GGATGAAACAATAAGAGCCCGCACAGCAAAAGTTCTTGGAAATAAAAGTA
AATCTCAATACcataaaattcattattttcgttGCCATCATCGTACACAC
CATCCACCCACAATGAACCATATACAGGTGTTAAAGGCCGATCCATCTAA
AAGATTTCGAAATGCTGATTGTCCCTTTTCAATGTCAATTCGTATTTTCC
GTGATGAATCTGCAAAATACCCCGCTCAAATCAATATCGAGTATTCACAT
AGCCATTCGACAAAATCATTACAAAGTTTGAGCTTCAAAGATATTCCTGA
CCACGTTTCAAAGACGATACatgaactttttcaaaaaggatATACCCCTG
GATTAGCATATCGTGAGATGATGCAAGACCTCAAGTCAAAGAGTATAGAT
GACCTAGATTTCCACCTGAAACTGGCGGACAGCTCACAAATGCCACGGAG
GAGAGATTTCAATAGTTTATATACAGATTATCATAGAAGATTGTTCGGAA
CCGCCAAT Coding sequence (CDS) from alignment at sc0003193:3614..4471 >TCONS_00042075 ID=TCONS_00042075|Name=TCONS_00042075|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0003193:3614..4471 (Clytia hemisphaerica)
atGGCAGCTTCGTCTCCAGATGTATTTGAAGATTGGAAAACCATTTTCAA
CGAAAAGATCTCTGACACAGAAGAATTGATAGCATGTGTCAAGGAGATCT
TACCTTTTCAATCATCAGAGAACACATATGAAATCATTTCTGTTAAGGGT
ACAACCAATGCTTTCAAAACAACGATAGGCTGTTCCCTTAAAAATGATGG
TGATGTCAAAAATTTCATCGAAGAATATTGCAAAAAGACGGATGAAACAA
TAAGAGCCCGCACAGCAAAAGTTCTTGGAAATAAAAGTAAATCTCAATAC
cataaaattcattattttcgttGCCATCATCGTACACACCATCCACCCAC
AATGAACCATATACAGGTGTTAAAGGCCGATCCATCTAAAAGATTTCGAA
ATGCTGATTGTCCCTTTTCAATGTCAATTCGTATTTTCCGTGATGAATCT
GCAAAATACCCCGCTCAAATCAATATCGAGTATTCACATAGCCATTCGAC
AAAATCATTACAAAGTTTGAGCTTCAAAGATATTCCTGACCACGTTTCAA
AGACGATACatgaactttttcaaaaaggatATACCCCTGGATTAGCATAT
CGTGAGATGATGCAAGACCTCAAGTCAAAGAGTATAGATGACCTAGATTT
CCACCTGAAACTGGCGGACAGCTCACAAATGCCACGGAGGAGAGATTTCA
ATAGTTTATATACAGATTATCATAGAAGATTGTTCGGAACCGCCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042075-exon-sc0003193-1491911889:3614..4471 | TCONS_00042075-exon-sc0003193-1491911889:3614..4471 | Clytia hemisphaerica | exon |
| TCONS_00042075-exon-sc0003193-1510915933:3614..4471 | TCONS_00042075-exon-sc0003193-1510915933:3614..4471 | Clytia hemisphaerica | exon |
| TCONS_00042075-exon-sc0003193-1575043694:3614..4471 | TCONS_00042075-exon-sc0003193-1575043694:3614..4471 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003193 | supercontig | sc0003193:3614..4471 . |
Blast
The following BLAST results are available for this feature:
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