TCONS_00042068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042068
Unique NameTCONS_00042068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042068 ID=TCONS_00042068|Name=TCONS_00042068|organism=Clytia hemisphaerica|type=transcript|length=505bp
TCGTCAGCTTTCCGTGACTTTAGAGAACGGATTACCGCGCGCAAATATGC
GAGATTTTTCACCATACAAAACGTCTCTGAATACACCGCTCCGCGGTCGA
TTATTGaatgtttcatttcatttctcacatctgggaaagctttggaagcc
tactaggtcacagtgtagCACACTGAGGCGACCGCGGTCAAATcttatga
aatttatgaatttgtaTACCATTTACCGTTTAATATGAACAGTACATATA
GAAAGGTTTGGTCTCCATGTAAGGCTACGTTTAGGCAACCTATATTACAT
ATGTTATATGCTACAACTATATTATAGTTGTACTATAGAAAGTTTTGTTG
TAACAGTCGGGTCGAAAGACTATGGAGTATATTGtactttttcctttaaa
actgttttatctCCGTAATACTTTGCAAATACAGAAATCTAAGGAAGATA
ATTACTTTTTCCGAGCGAGTGTTATTCAGAGACTTCAAAGATAGAGGAAC
GTGAT
Run BLAST on NCBI

transcript from alignment at sc0003184:9994..10498

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042068 ID=TCONS_00042068|Name=TCONS_00042068|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at sc0003184:9994..10498 (Clytia hemisphaerica)
ATCACGTTCCTCTATCTTTGAAGTCTCTGAATAACACTCGCTCGGAAAAA
GTAATTATCTTCCTTAGATTTCTGTATTTGCAAAGTATTACGGagataaa
acagttttaaaggaaaaagtaCAATATACTCCATAGTCTTTCGACCCGAC
TGTTACAACAAAACTTTCTATAGTACAACTATAATATAGTTGTAGCATAT
AACATATGTAATATAGGTTGCCTAAACGTAGCCTTACATGGAGACCAAAC
CTTTCTATATGTACTGTTCATATTAAACGGTAAATGGTAtacaaattcat
aaatttcataagATTTGACCGCGGTCGCCTCAGTGTGctacactgtgacc
tagtaggcttccaaagctttcccagatgtgagaaatgaaatgaaacattC
AATAATCGACCGCGGAGCGGTGTATTCAGAGACGTTTTGTATGGTGAAAA
ATCTCGCATATTTGCGCGCGGTAATCCGTTCTCTAAAGTCACGGAAAGCT
GACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025953XLOC_025953Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042068-exon-sc0003184-1491911889:9994..10498TCONS_00042068-exon-sc0003184-1491911889:9994..10498Clytia hemisphaericaexon
TCONS_00042068-exon-sc0003184-1510915933:9994..10498TCONS_00042068-exon-sc0003184-1510915933:9994..10498Clytia hemisphaericaexon
TCONS_00042068-exon-sc0003184-1575043694:9994..10498TCONS_00042068-exon-sc0003184-1575043694:9994..10498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003184supercontigsc0003184:9994..10498 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2137	2.72253	3.12511	5.88939	0.379996	1.09849	0.513936	0.90423	0.543816	0.402485	1.53232	0.854753	1.20568	1.1921	1.17636	1.46628	2.26831	0.894315	1.64535	1.25874	4.73251	4.33865	3.88659	2.393	0	0.231007	7.8598	6.8809	4.09648	3.7398
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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