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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042060 ID=TCONS_00042060|Name=TCONS_00042060|organism=Clytia hemisphaerica|type=transcript|length=1185bp
CGAAAGTCGACATAAAGTCTGATGCACTTGAATTATTTTTGGAGTATAAC
AACTTGACATATGATACTATTGAAAAACTAACTGGAACTTCTAAGTCAAC
CATTCAGCGCCGCGTTATCGAGTATGGGCTCTCACCCACTCCTTATCCTG
ATATATCCGATGAAGACTTGTATTCCGTTGTGAAAGATATTCTAACCGAT
TTTTCCCAACATTGGTATTCGCAGAATGAAAGGGTTTTTACTCTCAAAAG
GCTTAAAAATTCAATGGGATAGGGTTCGCCAAGCGTTATGGAACGTCGAC
CCAGAGGGTATAATCAATAGATCGATATTCTCTACCATCATCACTAGAAG
AAAATATTGTGTGCCAGGGCCCCTTGCGCTCTGGCATATAGACGGAAACC
ATAAACTTATTAGATACGGTTTCGTTGTTCATGGAGGGATTGATGGATAC
TCGAGACGAATCATGTTTTTGCATTGTTCGACAAATAATTTGGCTCGCAC
GGTGCTGCGATTGTTTGAAGATGCTGTTATCTATTACGGGCTACCATCTC
GTGTAAGAGGTGACCACGGTGTAGAGAATGTAGATGTGGCTCGTTACATG
TTTAATCACCCTTTACGTGGCCCTGGAAGAGGAAGCTTTATATCAGGTAA
AAGCTGTCACAACCAGAGAATAGAGAGACTCTGGCGTGACGTATTCTGTG
CTTGCTTGAGTTATTATTATTGTGCATTCCAATACTTGGAGCAGAATGAT
TTTTTAGACATTTCTTCATGGAAACATTTATACCTGCTGCATTACATATT
CTTACCAAGATTGAATAAAAGTTTGGGGTCTTTTTGGGATGCATGGAACC
ACCATCCGATTTCAACAGCTCGAAACAAGACCCCGATGCAGCTTTGGCTA
ACTGGAATCGTTAACTACTGCCCTAATCAACCGGATCAAGTGTttgattt
tgttaattttggaATAGACCATTTTATTCATAGAgatattgattttgatg
atACTAACATTGCTATCGAAGTGCCTCAATTTGACTGTCCTTTCACAATG
AACGAGTTATTGGTGCTTCATTCAATCCAGCCATTAGCAGAATCATCCTC
ATTTGGAATAGATATTTATGTATCTGCTTTAGAAATGCTTCAACTTTGAG
TCATTTCACttactttaaaggaagaaactttcgcg Run BLAST on NCBI protein sequence of TCONS_00042060-protein >TCONS_00042060-protein ID=TCONS_00042060-protein|Name=TCONS_00042060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MKGFLLSKGLKIQWDRVRQALWNVDPEGIINRSIFSTIITRRKYCVPGPL
ALWHIDGNHKLIRYGFVVHGGIDGYSRRIMFLHCSTNNLARTVLRLFEDA
VIYYGLPSRVRGDHGVENVDVARYMFNHPLRGPGRGSFISGKSCHNQRIE
RLWRDVFCACLSYYYCAFQYLEQNDFLDISSWKHLYLLHYIFLPRLNKSL
GSFWDAWNHHPISTARNKTPMQLWLTGIVNYCPNQPDQVFDFVNFGIDHF
IHRDIDFDDTNIAIEVPQFDCPFTMNELLVLHSIQPLAESSSFGIDIYVS
ALEMLQL Run BLAST on NCBI transcript from alignment at sc0003176:12465..13649 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042060 ID=TCONS_00042060|Name=TCONS_00042060|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at sc0003176:12465..13649 (Clytia hemisphaerica)
cgcgaaagtttcttcctttaaagtaaGTGAAATGACTCAAAGTTGAAGCA
TTTCTAAAGCAGATACATAAATATCTATTCCAAATGAGGATGATTCTGCT
AATGGCTGGATTGAATGAAGCACCAATAACTCGTTCATTGTGAAAGGACA
GTCAAATTGAGGCACTTCGATAGCAATGTTAGTatcatcaaaatcaatat
cTCTATGAATAAAATGGTCTATtccaaaattaacaaaatcaaACACTTGA
TCCGGTTGATTAGGGCAGTAGTTAACGATTCCAGTTAGCCAAAGCTGCAT
CGGGGTCTTGTTTCGAGCTGTTGAAATCGGATGGTGGTTCCATGCATCCC
AAAAAGACCCCAAACTTTTATTCAATCTTGGTAAGAATATGTAATGCAGC
AGGTATAAATGTTTCCATGAAGAAATGTCTAAAAAATCATTCTGCTCCAA
GTATTGGAATGCACAATAATAATAACTCAAGCAAGCACAGAATACGTCAC
GCCAGAGTCTCTCTATTCTCTGGTTGTGACAGCTTTTACCTGATATAAAG
CTTCCTCTTCCAGGGCCACGTAAAGGGTGATTAAACATGTAACGAGCCAC
ATCTACATTCTCTACACCGTGGTCACCTCTTACACGAGATGGTAGCCCGT
AATAGATAACAGCATCTTCAAACAATCGCAGCACCGTGCGAGCCAAATTA
TTTGTCGAACAATGCAAAAACATGATTCGTCTCGAGTATCCATCAATCCC
TCCATGAACAACGAAACCGTATCTAATAAGTTTATGGTTTCCGTCTATAT
GCCAGAGCGCAAGGGGCCCTGGCACACAATATTTTCTTCTAGTGATGATG
GTAGAGAATATCGATCTATTGATTATACCCTCTGGGTCGACGTTCCATAA
CGCTTGGCGAACCCTATCCCATTGAATTTTTAAGCCTTTTGAGAGTAAAA
ACCCTTTCATTCTGCGAATACCAATGTTGGGAAAAATCGGTTAGAATATC
TTTCACAACGGAATACAAGTCTTCATCGGATATATCAGGATAAGGAGTGG
GTGAGAGCCCATACTCGATAACGCGGCGCTGAATGGTTGACTTAGAAGTT
CCAGTTAGTTTTTCAATAGTATCATATGTCAAGTTGTTATACTCCAAAAA
TAATTCAAGTGCATCAGACTTTATGTCGACTTTCG Coding sequence (CDS) from alignment at sc0003176:12465..13649 >TCONS_00042060 ID=TCONS_00042060|Name=TCONS_00042060|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at sc0003176:12465..13649 (Clytia hemisphaerica)
TCAAAGTTGAAGCATTTCTAAAGCAGATACATAAATATCTATTCCAAATG
AGGATGATTCTGCTAATGGCTGGATTGAATGAAGCACCAATAACTCGTTC
ATTGTGAAAGGACAGTCAAATTGAGGCACTTCGATAGCAATGTTAGTatc
atcaaaatcaatatcTCTATGAATAAAATGGTCTATtccaaaattaacaa
aatcaaACACTTGATCCGGTTGATTAGGGCAGTAGTTAACGATTCCAGTT
AGCCAAAGCTGCATCGGGGTCTTGTTTCGAGCTGTTGAAATCGGATGGTG
GTTCCATGCATCCCAAAAAGACCCCAAACTTTTATTCAATCTTGGTAAGA
ATATGTAATGCAGCAGGTATAAATGTTTCCATGAAGAAATGTCTAAAAAA
TCATTCTGCTCCAAGTATTGGAATGCACAATAATAATAACTCAAGCAAGC
ACAGAATACGTCACGCCAGAGTCTCTCTATTCTCTGGTTGTGACAGCTTT
TACCTGATATAAAGCTTCCTCTTCCAGGGCCACGTAAAGGGTGATTAAAC
ATGTAACGAGCCACATCTACATTCTCTACACCGTGGTCACCTCTTACACG
AGATGGTAGCCCGTAATAGATAACAGCATCTTCAAACAATCGCAGCACCG
TGCGAGCCAAATTATTTGTCGAACAATGCAAAAACATGATTCGTCTCGAG
TATCCATCAATCCCTCCATGAACAACGAAACCGTATCTAATAAGTTTATG
GTTTCCGTCTATATGCCAGAGCGCAAGGGGCCCTGGCACACAATATTTTC
TTCTAGTGATGATGGTAGAGAATATCGATCTATTGATTATACCCTCTGGG
TCGACGTTCCATAACGCTTGGCGAACCCTATCCCATTGAATTTTTAAGCC
TTTTGAGAGTAAAAACCCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042060-exon-sc0003176-1491911889:12465..13649 | TCONS_00042060-exon-sc0003176-1491911889:12465..13649 | Clytia hemisphaerica | exon |
| TCONS_00042060-exon-sc0003176-1510915933:12465..13649 | TCONS_00042060-exon-sc0003176-1510915933:12465..13649 | Clytia hemisphaerica | exon |
| TCONS_00042060-exon-sc0003176-1575043694:12465..13649 | TCONS_00042060-exon-sc0003176-1575043694:12465..13649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003176 | supercontig | sc0003176:12465..13649 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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