TCONS_00042058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042058
Unique NameTCONS_00042058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042058 ID=TCONS_00042058|Name=TCONS_00042058|organism=Clytia hemisphaerica|type=transcript|length=490bp
GTGAAATCTTTATCCAGGGATTTGATGCTTGCTGATGGATCAACTTGATG
CTCGTCTATGAAGTCTGCAAGCTCAGCGTGAACAATCTAGTAATCGATGG
CTAACGATGCAATTTCAGTAGCCATTGCGTGTGGGATAGCTACTTTTGAT
GTGGGAGGTTGTTCTTTCACATTTTTACAAAAGGTCTTATAATTGATTTG
GTCTTTTGTCTTCAAACGATCACTCCTTCTCATTGATTTGATATATGGGT
GTGtcaaattgattagatgacgtGAACGTCAGCTTGAGTCTGTGTGCGAC
GGTTTGTTGAGCGTCAGCAACGATTGGTTAAATGTCGGACGACAGTTTGT
TGAGTGTCGGCGACGATTGATTTGATGTCGAACAATGGTTTGTTGAGCAT
CAGTGACAGTTGACTTGATGTCGGATGACGGTTTGTTGAGCGTCGGCGAC
AATTGATATTTGTGCTGTTTGAATGTGGAATTATCGGACA
Run BLAST on NCBI

transcript from alignment at sc0003175:5108..5597

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042058 ID=TCONS_00042058|Name=TCONS_00042058|organism=Clytia hemisphaerica|type=transcript|length=490bp|location=Sequence derived from alignment at sc0003175:5108..5597 (Clytia hemisphaerica)
TGTCCGATAATTCCACATTCAAACAGCACAAATATCAATTGTCGCCGACG
CTCAACAAACCGTCATCCGACATCAAGTCAACTGTCACTGATGCTCAACA
AACCATTGTTCGACATCAAATCAATCGTCGCCGACACTCAACAAACTGTC
GTCCGACATTTAACCAATCGTTGCTGACGCTCAACAAACCGTCGCACACA
GACTCAAGCTGACGTTCacgtcatctaatcaatttgaCACACCCATATAT
CAAATCAATGAGAAGGAGTGATCGTTTGAAGACAAAAGACCAAATCAATT
ATAAGACCTTTTGTAAAAATGTGAAAGAACAACCTCCCACATCAAAAGTA
GCTATCCCACACGCAATGGCTACTGAAATTGCATCGTTAGCCATCGATTA
CTAGATTGTTCACGCTGAGCTTGCAGACTTCATAGACGAGCATCAAGTTG
ATCCATCAGCAAGCATCAAATCCCTGGATAAAGATTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025943XLOC_025943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042058-exon-sc0003175-1491911889:5108..5597TCONS_00042058-exon-sc0003175-1491911889:5108..5597Clytia hemisphaericaexon
TCONS_00042058-exon-sc0003175-1510915933:5108..5597TCONS_00042058-exon-sc0003175-1510915933:5108..5597Clytia hemisphaericaexon
TCONS_00042058-exon-sc0003175-1575043694:5108..5597TCONS_00042058-exon-sc0003175-1575043694:5108..5597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003175supercontigsc0003175:5108..5597 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.540905	0.902485	0.285905	0.699285	0.170262	0.538174	0.162321	0.151963	0	0.521113	0	0.761924	0.187031	0.191601	0	0	0	0	0.0684583	0.524562	0	0	0	0	1.50202	1.45175	0.173121	0	0	0.285548
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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