|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042053 ID=TCONS_00042053|Name=TCONS_00042053|organism=Clytia hemisphaerica|type=transcript|length=921bp
TGTACATGTAACACCTAAATAACTCTCTCTACTCTCTCACACAACCATCT
AACCTCCTATTCAATCAACATGTTATAGTTACACTGGAACGGGCAGTGTG
TCCCTCGGGTAGTTCTCCTTATATACAAGACGCCCGTCATTGCCTCGACC
TTGTTGGAGTAGTCTATAACCCGTGCGCCcattaaaagtgtttttttctt
actaatttttttcaaaatctttgaggATAAAAAAAGTCGGATGACACCGA
TATAGTGCGCTCCAGATACTNACAgtttcttaatcttttttataagatgc
GTGGCaggcacccctgtctcactttTTTTTATTACGAGGAAGCGGTTGCT
TTTGTGAATCACCTTTGGCCCTAATCTCAACAACGTAAACCTACTATAAT
CGcataaacaaaaattaaaggGATCGCTGCGAAACGATCTCAACAATCTT
CTGTTACTTTGTTTGGTCATGAGCTAATCTTGTTCAACTTTCATCAATTC
TATTCTTAGCTTGTTTATCATACCAAACAGTGTTTCTATTTTCATGTACA
GAACTGCGCATATTCTGTACAACTAATTTTCTCTGCAAATTTGCAATTCG
ATTTTCTCCGAAATTTCTCGAAAACCTAAATACGTATATCTACTAAACCC
CCATCATGATTCCGATATATCTCATTAAACTTCTATTATCCCCCAACGTG
ACTGTTCCACGCTCGGGCGCTAAGCTATGGTCACACGTGGTCCAAAAAAA
TCGCAATACTCTATTCATAACTCAAATAATCTTCTATATAACTCTGTAAT
TCATAACTCAATTCAATATTTCCAAATAACTCAATAATCCCCCACACTCG
TCATAACTCTCATTGCCTCGAGACATCATTCTGAGCTTTAAACTTATATA
GCGCGCGCTTCTCACATTCAC Run BLAST on NCBI transcript from alignment at sc0003170:2240..3160 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042053 ID=TCONS_00042053|Name=TCONS_00042053|organism=Clytia hemisphaerica|type=transcript|length=921bp|location=Sequence derived from alignment at sc0003170:2240..3160 (Clytia hemisphaerica)
GTGAATGTGAGAAGCGCGCGCTATATAAGTTTAAAGCTCAGAATGATGTC
TCGAGGCAATGAGAGTTATGACGAGTGTGGGGGATTATTGAGTTATTTGG
AAATATTGAATTGAGTTATGAATTACAGAGTTATATAGAAGATTATTTGA
GTTATGAATAGAGTATTGCGATTTTTTTGGACCACGTGTGACCATAGCTT
AGCGCCCGAGCGTGGAACAGTCACGTTGGGGGATAATAGAAGTTTAATGA
GATATATCGGAATCATGATGGGGGTTTAGTAGATATACGTATTTAGGTTT
TCGAGAAATTTCGGAGAAAATCGAATTGCAAATTTGCAGAGAAAATTAGT
TGTACAGAATATGCGCAGTTCTGTACATGAAAATAGAAACACTGTTTGGT
ATGATAAACAAGCTAAGAATAGAATTGATGAAAGTTGAACAAGATTAGCT
CATGACCAAACAAAGTAACAGAAGATTGTTGAGATCGTTTCGCAGCGATC
cctttaatttttgtttatgCGATTATAGTAGGTTTACGTTGTTGAGATTA
GGGCCAAAGGTGATTCACAAAAGCAACCGCTTCCTCGTAATAAAAAaaag
tgagacaggggtgcctGCCACgcatcttataaaaaagattaagaaacTGT
NAGTATCTGGAGCGCACTATATCGGTGTCATCCGACTTTTTTTATcctca
aagattttgaaaaaaattagtaagaaaaaaacacttttaatgGGCGCACG
GGTTATAGACTACTCCAACAAGGTCGAGGCAATGACGGGCGTCTTGTATA
TAAGGAGAACTACCCGAGGGACACACTGCCCGTTCCAGTGTAACTATAAC
ATGTTGATTGAATAGGAGGTTAGATGGTTGTGTGAGAGAGTAGAGAGAGT
TATTTAGGTGTTACATGTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042053-exon-sc0003170-1491911889:2240..3160 | TCONS_00042053-exon-sc0003170-1491911889:2240..3160 | Clytia hemisphaerica | exon |
| TCONS_00042053-exon-sc0003170-1510915933:2240..3160 | TCONS_00042053-exon-sc0003170-1510915933:2240..3160 | Clytia hemisphaerica | exon |
| TCONS_00042053-exon-sc0003170-1575043694:2240..3160 | TCONS_00042053-exon-sc0003170-1575043694:2240..3160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003170 | supercontig | sc0003170:2240..3160 . |
Blast
The following BLAST results are available for this feature:
|
