TCONS_00042052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042052
Unique NameTCONS_00042052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042052 ID=TCONS_00042052|Name=TCONS_00042052|organism=Clytia hemisphaerica|type=transcript|length=375bp
tttcagactATCAGAGTGACGAAAATAATAAAACGTTGACAAAATCATTA
TATCATTATTCAAAGGAACTTCATTGCTTCGGTGCTTGCATACATGTTTT
AAAATTTGTCGAACAAATGATTTCTTTGGAGTTGttctttaaattcaaaa
aagtagAGGCAGCACAGTTTGCTACCGTCCCCAAAGTCAATGCTCCCAAA
CTGACGCTCTCCAACATAAACTACGCCGGCGTGGAGTATCACCCTATTGT
CCAGCAAACCTGCAACAACCTTTTTCATGTCACGCGGCATCATCCCCACA
GCATCGCCATTTTTGTTGATGATTTTTATGGCATTTGAATCGTATCGATT
TGCTGGATCTCGCTGACATACCATT
Run BLAST on NCBI

protein sequence of TCONS_00042052-protein

>TCONS_00042052-protein ID=TCONS_00042052-protein|Name=TCONS_00042052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
SDYQSDENNKTLTKSLYHYSKELHCFGACIHVLKFVEQMISLELFFKFKK
VEAAQFATVPKVNAPKLTLSNINYAGVEYHPIVQQTCNNLFHVTRHHPHS
IAIFVDDFYGI
Run BLAST on NCBI

transcript from alignment at sc0003169:8044..8418

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042052 ID=TCONS_00042052|Name=TCONS_00042052|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at sc0003169:8044..8418 (Clytia hemisphaerica)
AATGGTATGTCAGCGAGATCCAGCAAATCGATACGATTCAAATGCCATAA
AAATCATCAACAAAAATGGCGATGCTGTGGGGATGATGCCGCGTGACATG
AAAAAGGTTGTTGCAGGTTTGCTGGACAATAGGGTGATACTCCACGCCGG
CGTAGTTTATGTTGGAGAGCGTCAGTTTGGGAGCATTGACTTTGGGGACG
GTAGCAAACTGTGCTGCCTctacttttttgaatttaaagaaCAACTCCAA
AGAAATCATTTGTTCGACAAATTTTAAAACATGTATGCAAGCACCGAAGC
AATGAAGTTCCTTTGAATAATGATATAATGATTTTGTCAACGTTTTATTA
TTTTCGTCACTCTGATagtctgaaa

Coding sequence (CDS) from alignment at sc0003169:8044..8418

>TCONS_00042052 ID=TCONS_00042052|Name=TCONS_00042052|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0003169:8044..8418 (Clytia hemisphaerica)
TCAAATGCCATAAAAATCATCAACAAAAATGGCGATGCTGTGGGGATGAT
GCCGCGTGACATGAAAAAGGTTGTTGCAGGTTTGCTGGACAATAGGGTGA
TACTCCACGCCGGCGTAGTTTATGTTGGAGAGCGTCAGTTTGGGAGCATT
GACTTTGGGGACGGTAGCAAACTGTGCTGCCTctacttttttgaatttaa
agaaCAACTCCAAAGAAATCATTTGTTCGACAAATTTTAAAACATGTATG
CAAGCACCGAAGCAATGAAGTTCCTTTGAATAATGATATAATGATTTTGT
CAACGTTTTATTATTTTCGTCACTCTGATagtctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025937XLOC_025937Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042052-proteinTCONS_00042052-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042052-exon-sc0003169-1491911889:8044..8418TCONS_00042052-exon-sc0003169-1491911889:8044..8418Clytia hemisphaericaexon
TCONS_00042052-exon-sc0003169-1510915933:8044..8418TCONS_00042052-exon-sc0003169-1510915933:8044..8418Clytia hemisphaericaexon
TCONS_00042052-exon-sc0003169-1575043694:8044..8418TCONS_00042052-exon-sc0003169-1575043694:8044..8418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003169supercontigsc0003169:8044..8418 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.288215	0.227751	0.274773	2.05791	0	0.669245	0	0.284674	0.568557	0.590452	1.4563	2.34424	0.802199	2.46668	0.454381	0.713216	0.413276	0.907117	1.71534	0.222785	0	0.409581	0	0	0	0.483367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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