TCONS_00042051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042051
Unique NameTCONS_00042051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042051 ID=TCONS_00042051|Name=TCONS_00042051|organism=Clytia hemisphaerica|type=transcript|length=251bp
cgACGACTGCCAACAGATGACTTATTGCAATTCAATCACTTCGCTCGTCA
gaacatttaaaaagttttcatgaGAATTTTATCATCagcaaatatttcat
tttttaaacatttatccCTGGACATTTTATTAAATTTACCAAATAGACAT
ggccattttttcaaagattttttgcaGGGGTATCGAAAACCTCTGGACAA
ATTATCCTACATCCCATGAACAGATTTCTTCCGGAAGAGTCCAAAGCGTT
T
Run BLAST on NCBI

transcript from alignment at sc0003169:1798..2048

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042051 ID=TCONS_00042051|Name=TCONS_00042051|organism=Clytia hemisphaerica|type=transcript|length=251bp|location=Sequence derived from alignment at sc0003169:1798..2048 (Clytia hemisphaerica)
AAACGCTTTGGACTCTTCCGGAAGAAATCTGTTCATGGGATGTAGGATAA
TTTGTCCAGAGGTTTTCGATACCCCtgcaaaaaatctttgaaaaaatggc
cATGTCTATTTGGTAAATTTAATAAAATGTCCAGggataaatgtttaaaa
aatgaaatatttgctGATGATAAAATTCtcatgaaaactttttaaatgtt
cTGACGAGCGAAGTGATTGAATTGCAATAAGTCATCTGTTGGCAGTCGTc
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025936XLOC_025936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042051-exon-sc0003169-1491911889:1798..2048TCONS_00042051-exon-sc0003169-1491911889:1798..2048Clytia hemisphaericaexon
TCONS_00042051-exon-sc0003169-1510915933:1798..2048TCONS_00042051-exon-sc0003169-1510915933:1798..2048Clytia hemisphaericaexon
TCONS_00042051-exon-sc0003169-1575043694:1798..2048TCONS_00042051-exon-sc0003169-1575043694:1798..2048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003169supercontigsc0003169:1798..2048 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.754611	0	0	0	5.35972	3.58481	1.94034	3.4532	2.23642	0.78766	0	1.10607	1.43843	0.720798	0.239771	0.459839	2.20183	0.495834	0	0.839411	1.37585	0	0	0.728709	0	2.85694	1.6857	0.941633	2.72723	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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