TCONS_00042049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042049
Unique NameTCONS_00042049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042049 ID=TCONS_00042049|Name=TCONS_00042049|organism=Clytia hemisphaerica|type=transcript|length=579bp
TAGAAAGTTCCAAACGTTATTGCTACTGTCGAATCACTGATAGTGAGGGT
GGCCACTTTGTTGGTTGCAGTGACGAGAATTGTTTAATTACATGttaTCA
TAAAAAATGTGTTGGTATGGCGATCAATCATACGCCTAAGGACAACTGGA
TATGTCCTCGTTGTAAACGTGTATATCATTGCCGTACTTGTGGAAAGAAA
GCAACTGATAATATGGTAGAGTGTTCTGGTGAAGAATGTGTGACGAATCG
TTTTCATTTAGCTTGTGTTGAGCTAAATAGTTAGCCTATCGGTGCCTGGT
TTTGCCCAGAGTGTCTAGTTGATCAGGACACAGAAAGGTCGATATGCCTT
TGCTCACAAAGTGTCAACATGGATACAACGACCACCTGTGCCTCGAGGAA
ATGCACGATAAAAGTATTTCACACATGTTGCGTGAAAATCCAAGACAAAG
AGAATTGGCACTGTAAGAATTGTGAGTGAATGGAAGGATAAGTGAATAAA
TAGATTATGAAGTCTCGCGTTTTTTATATAGATTTGTACATAGtaggata
tatttttttcaatggttttgaaacaagtt
Run BLAST on NCBI

transcript from alignment at sc0003169:4207..5171+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042049 ID=TCONS_00042049|Name=TCONS_00042049|organism=Clytia hemisphaerica|type=transcript|length=965bp|location=Sequence derived from alignment at sc0003169:4207..5171+ (Clytia hemisphaerica)
TAGAAAGTTCCAAACGTTATTGCTACTGTCGAATCACTGATAGTGAGGGT
GGCCACTTTGTTGGTTGCAGTGACGAGAATTGTTTAATTACATGGTAATC
ATAAAACTGAAATTTTGCCTGTGTCTTTTTGTCATCCCTTCTAAATGTGA
CAGCGGTATTCTCTCATTATTTGATACCTATGACTTCCTTCTCCCCTTCT
TTATAAAAGACTTATTACAATTggttaaaaatttattacagTGGCTGGTC
TCTTAAAAGGGAAGGTAGTTAGTTATAATTGTTAACACATTATATTTGTC
TGTACAAAGTTATTGGTTTAAATGATTATCTAGAAAATTCACtgcaattt
cttttctttttaagttaTCATAAAAAATGTGTTGGTATGGCGATCAATCA
TACGCCTAAGGACAACTGGATATGTCCTCGTTGTAAACGTGTATATCATT
GCCGTACTTGTGGAAAGAAAGGTGAGAGATGTTTTTTGCTACCCCAAAAG
TCATTAAGTTTTAGATATTTCTGCTTACATCAACAGTTTTTCCCAGCCCA
ATCGTTTGCCCTTATTAAGCAAATACTCTCTTTTCAGCAACTGATAATAT
GGTAGAGTGTTCTGGTGAAGAATGTGTGACGAATCGTTTTCATTTAGCTT
GTGTTGAGCTAAATAGTTAGCCTATCGGTGCCTGGTTTTGCCCAGAGTGT
CTAGTTGATCAGGACACAGAAAGGTCGATATGCCTTTGCTCACAAAGTGT
CAACATGGATACAACGACCACCTGTGCCTCGAGGAAATGCACGATAAAAG
TATTTCACACATGTTGCGTGAAAATCCAAGACAAAGAGAATTGGCACTGT
AAGAATTGTGAGTGAATGGAAGGATAAGTGAATAAATAGATTATGAAGTC
TCGCGTTTTTTATATAGATTTGTACATAGtaggatatatttttttcaatg
gttttgaaacaagtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025934XLOC_025934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042049-exon-sc0003169-1491911889:4207..4300TCONS_00042049-exon-sc0003169-1491911889:4207..4300Clytia hemisphaericaexon
TCONS_00042049-exon-sc0003169-1510915933:4207..4300TCONS_00042049-exon-sc0003169-1510915933:4207..4300Clytia hemisphaericaexon
TCONS_00042049-exon-sc0003169-1575043694:4207..4300TCONS_00042049-exon-sc0003169-1575043694:4207..4300Clytia hemisphaericaexon
TCONS_00042049-exon-sc0003169-1491911889:4571..4677TCONS_00042049-exon-sc0003169-1491911889:4571..4677Clytia hemisphaericaexon
TCONS_00042049-exon-sc0003169-1510915933:4571..4677TCONS_00042049-exon-sc0003169-1510915933:4571..4677Clytia hemisphaericaexon
TCONS_00042049-exon-sc0003169-1575043694:4571..4677TCONS_00042049-exon-sc0003169-1575043694:4571..4677Clytia hemisphaericaexon
TCONS_00042049-exon-sc0003169-1491911889:4794..5171TCONS_00042049-exon-sc0003169-1491911889:4794..5171Clytia hemisphaericaexon
TCONS_00042049-exon-sc0003169-1510915933:4794..5171TCONS_00042049-exon-sc0003169-1510915933:4794..5171Clytia hemisphaericaexon
TCONS_00042049-exon-sc0003169-1575043694:4794..5171TCONS_00042049-exon-sc0003169-1575043694:4794..5171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003169supercontigsc0003169:4207..5171 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.129307	0.10218	0.246553	0	0.0808011	0.20017	0	0.127719	0.318853	0.331132	1.52625	0.958406	0.215943	0.368892	0	0	0.278123	0.135659	0	0	0	0	0	0	0	0.108431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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