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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042047 ID=TCONS_00042047|Name=TCONS_00042047|organism=Clytia hemisphaerica|type=transcript|length=1456bp
AGAGAATCAGTTGTATGTACATACATCTATAcataaaaaggagaaaataa
aaatgttcaaatttttatttatatattatattgttgttttctttgttttg
ggtGGTGGTCTTATTTTGGGTGGATATAATGGATATATTTACTACCCCGC
TGAAGCAGGTTGTGTCACTGGAGTGTATTTTGTCTTCCATTTAGTTGATG
GAGTTTTTGCAGCTAATTGTCGACACTCAAAGGTCCTACAACGTGTGCGT
TTAAAAGTTCTTCAATGGCAATTTAGTTTGGTTTTACTTGGAACTGTTTT
GCTAGAGTTGTCGATTATGAAATCTATTTTCGGAGCATAGACTGTGTTGT
CATTCGGTCACACAGTTATAGCAGCCATTATGCCCATTATGGTATGTTGC
AATGGCGATTTAAGATTAACTTTTGGAGGACGCTATGAAAGAAGTATTGC
TtgggaaaacaaaatcaaacaaaacatACGAACAGCGCCTGAATTTGTAA
CATATTGTGAAGTGAGAGAACCAAAACCGatctggaaattttggaaaaca
aGAAAAGTCATTTGGAGAGAAAATAAGACTTTCAAATATAAACATTGGAT
TGATTTGAGCCAGATTGATGAAGTTTCGATTGAGAATATTAGAAAGGAGC
AGAATATTCAGAAGATTGAATTCGATATTCAATTTGATGACGAGGAAACA
GAAAAATCATATCAACAACATGTTCAAAATCTTTTGGACGAGTTACCTGA
AATGTGTCGGAATGGTGAGATCAAAACAAGACGCATAATCAAGCTGGATG
GAATCGACATTGATAGAGAGGTTGTCATGAATTTTAGTTCCACAGAAGAG
CATCCTTGGTTAGTGGTTTTGTCTTTGCCTGTCAGCATCCTTAGCATCTG
TCGGAAGATCTTCGATTGGTTAACCATTAGAATCGATATTGAACCCTTTT
TACAAAAAGTGACCATCAGAAAAGTCGTTTCAAACAAAGATATCGAGGTC
ATATAAACCTCAGTTAACTTCATATGTTAAGTATTGTTTTGGACAGATCT
GCATGTTTAACGTGATGATCCAAAACCAGGCATATAAACTCATTTTTCTG
TTCAACTGTAAATACATTCAGCCTTTAAACAATAGAGCTTGTTTCATTAG
TATAGGACTTTTAGAAATCAACAGACGAAACCTGGTAGACAATGAAGACT
CAGTAGAAAGTTTTATTTAAATTTTTTCTTTGTAATTTTTTGTTTATATT
AATGGTAAATGCCCCCTTATCCCCCGGGGGTAATAAATTTTTCTTTAATT
CGAACTAATATGTTGTCCTCTCAGCTAGAAATAAGTATTAAATACTTTCT
ATAATTTGATTCTTTCTCTAATTAAATTATCATATTTGACTGCAATCTCA
GAGTCTTCTTGGTACTCCTCCGGTAAGCTTTTTCGGAAATCATCAATTAA
TTGTTG Run BLAST on NCBI protein sequence of TCONS_00042047-protein >TCONS_00042047-protein ID=TCONS_00042047-protein|Name=TCONS_00042047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MPIMVCCNGDLRLTFGGRYERSIAWENKIKQNIRTAPEFVTYCEVREPKP
IWKFWKTRKVIWRENKTFKYKHWIDLSQIDEVSIENIRKEQNIQKIEFDI
QFDDEETEKSYQQHVQNLLDELPEMCRNGEIKTRRIIKLDGIDIDREVVM
NFSSTEEHPWLVVLSLPVSILSICRKIFDWLTIRIDIEPFLQKVTIRKVV
SNKDIEVI Run BLAST on NCBI transcript from alignment at sc0003168:6461..9411- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042047 ID=TCONS_00042047|Name=TCONS_00042047|organism=Clytia hemisphaerica|type=transcript|length=2951bp|location=Sequence derived from alignment at sc0003168:6461..9411- (Clytia hemisphaerica)
AGAGAATCAGTTGTATGTACATACATCTATACATAAAAAGGAGAAAATAA
AAATGTTCAAATTTTTATTTATATATTATATTGTTGTTTTCTTTGTTTTG
GGTGGTGGTCTTATTTTGGGTGGATATAATGGATATATTTACTACCCCGC
TGAAGCAGGTTGTGTCACTGGAGTGTATTTTGTCTTCCATTTAGTTGATG
GAGTTTTTGCAGCTAATTGTCGACACTCAAAGGTCCTACAACGTGTGCGT
TTAAAAGTTCTTCAATGGCGTAAGTAGTGACAAATCTCTTTTTTTTGCTT
AAAAATCTATTCATTTCGCTCTTCGGAGCAGATGGCGTACGAGATTTTTA
TGTTGAAATATCGAATGAAGAAATTTCATCCTCGATTTCGGCAGAATCTC
TTTGGAAAATAGCACAAAAAGAACGGTGTTTCTAATCCGCGGATACAGCC
ATAATCACCCATAATCATCCATAATCACCCATAATTACCCATAACCACCC
ATAATCACCCATAACCACCCATAATCACCTATAAGCAGCAATCGGCTACC
TCATTGGCTGTTTTTTCGTATATAAAGGAATGTACTCGCTTGTAAAATCA
TTCTAATACACCTTTCCTGGGGTGTTGTTTGGGATTTTATGTTTGAGTGT
TTCCCTTAGATATAGCTAAGATAGAACTAGATTAATTATACCTCACGGAA
AATTTTACCGGCTGAAAACACCGTACGGGCCGGCAATCGTCTGAAGGGGA
CGTCCTGCAGCGTATCTTGCGCGGCCCGTAGCCCAGCGACCGGTGATGGT
GGAGTGATGAAAGTCCAGTGCTAGGGGAGGGGGTCATTTACGGTCCCGTA
ACGTCCTTTCATCAACTTTTCAGGACTTCTAACTTATTTTTCGGAATCTA
CACCCAAAAAAACATGAAATATCAAAACCTGGATAAAAATTTTAAAGGTG
ACCTTGACCCGATTCGATCTGGGAATCCCTTGCGCGTAAACCCAACGCCT
TATACCAATGGGCCAATTTCTGGCCGTGGGTTGACGAAACCTCTCAGGAA
TGTCACTGCTTTCCACCATCCCACATCCACTACTCCAAGCTGGTCTGGTA
CGAGTTCTGACCCCCCCTCTAGAGCCTTCCCATGAACTTTTCAGGACTTT
GGACCACTTTTTTTGGAATCTATACCCAAAAAAACATAAAATATCAAAAC
CTGGTCAAAAATTGGGACTTTGACCCGAACCCTGGAGTGCTTTTTCTGGC
TTTTTATATCTTGTTCAAGGCCGACTAAGCAGTCAGGCAAAGTTCCCCGG
TGGGACCTATTGAGGCCTCTACAGCCAGGCCTCGTTTTCATGTAATTCTT
TTTCTAGTTCTATCTTAGTTCTATCTAAGGGAAACACTCAAACATAAAAT
CCCAAACAACACCCCGGAAAAGGTGTATTAGAATGATTTTACAAGCAAGT
GCATTCCTTTATATACGAAAAAATAGCCAATGAGGTAGCCGATTACTGAT
TATAGGTGATTATGGGTGGTTATGAGTGATTATGGGTGGTTATGGGTGAT
TATGGGTGGTTATGGGTGATTATGGCTGTATCTGCGGATTAGAAAAACCG
CAAAAAGAAAGGAATAATTGAGATCAAAATATTTTGAAGTAACTCTTGAA
GTCTTTTTTCTTTGTCCGTCTACATTAGAAGTTTGAATGTAATATAGATT
TTGGATACTACCATTTGATCTTTTATGTATTCAAAATATCGGCACTTTCT
TTTCTCGGATTTAGAATTTAGTTTGGTTTTACTTGGAACTGTTTTGCTAG
AGTTGTCGATTATGAAATCTATTTTCGGAGCATAGACTGTGTTGTCATTC
GGTCACACAGTTATAGCAGCCATTATGCCCATTATGGTATGTTGCAATGG
CGATTTAAGATTAACTTTTGGAGGACGCTATGAAAGAAGTATTGCTTGGG
AAAACAAAATCAAACAAAACATACGAACAGCGCCTGAATTTGTAACATAT
TGTGAAGTGAGAGAACCAAAACCGATCTGGAAATTTTGGAAAACAAGAAA
AGTCATTTGGAGAGAAAATAAGACTTTCAAATATAAACATTGGATTGATT
TGAGCCAGATTGATGAAGTTTCGATTGAGAATATTAGAAAGGAGCAGAAT
ATTCAGAAGATTGAATTCGATATTCAATTTGATGACGAGGAAACAGAAAA
ATCATATCAACAACATGTTCAAAATCTTTTGGACGAGTTACCTGAAATGT
GTCGGAATGGTGAGATCAAAACAAGACGCATAATCAAGCTGGATGGAATC
GACATTGATAGAGAGGTTGTCATGAATTTTAGTTCCACAGAAGAGCATCC
TTGGTTAGTGGTTTTGTCTTTGCCTGTCAGCATCCTTAGCATCTGTCGGA
AGATCTTCGATTGGTTAACCATTAGAATCGATATTGAACCCTTTTTACAA
AAAGTGACCATCAGAAAAGTCGTTTCAAACAAAGATATCGAGGTCATATA
AACCTCAGTTAACTTCATATGTTAAGTATTGTTTTGGACAGATCTGCATG
TTTAACGTGATGATCCAAAACCAGGCATATAAACTCATTTTTCTGTTCAA
CTGTAAATACATTCAGCCTTTAAACAATAGAGCTTGTTTCATTAGTATAG
GACTTTTAGAAATCAACAGACGAAACCTGGTAGACAATGAAGACTCAGTA
GAAAGTTTTATTTAAATTTTTTCTTTGTAATTTTTTGTTTATATTAATGG
TAAATGCCCCCTTATCCCCCGGGGGTAATAAATTTTTCTTTAATTCGAAC
TAATATGTTGTCCTCTCAGCTAGAAATAAGTATTAAATACTTTCTATAAT
TTGATTCTTTCTCTAATTAAATTATCATATTTGACTGCAATCTCAGAGTC
TTCTTGGTACTCCTCCGGTAAGCTTTTTCGGAAATCATCAATTAATTGTT
G Coding sequence (CDS) from alignment at sc0003168:6461..9411- >TCONS_00042047 ID=TCONS_00042047|Name=TCONS_00042047|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0003168:6461..9411- (Clytia hemisphaerica)
ATGCCCATTATGGTATGTTGCAATGGCGATTTAAGATTAACTTTTGGAGG
ACGCTATGAAAGAAGTATTGCTTGGGAAAACAAAATCAAACAAAACATAC
GAACAGCGCCTGAATTTGTAACATATTGTGAAGTGAGAGAACCAAAACCG
ATCTGGAAATTTTGGAAAACAAGAAAAGTCATTTGGAGAGAAAATAAGAC
TTTCAAATATAAACATTGGATTGATTTGAGCCAGATTGATGAAGTTTCGA
TTGAGAATATTAGAAAGGAGCAGAATATTCAGAAGATTGAATTCGATATT
CAATTTGATGACGAGGAAACAGAAAAATCATATCAACAACATGTTCAAAA
TCTTTTGGACGAGTTACCTGAAATGTGTCGGAATGGTGAGATCAAAACAA
GACGCATAATCAAGCTGGATGGAATCGACATTGATAGAGAGGTTGTCATG
AATTTTAGTTCCACAGAAGAGCATCCTTGGTTAGTGGTTTTGTCTTTGCC
TGTCAGCATCCTTAGCATCTGTCGGAAGATCTTCGATTGGTTAACCATTA
GAATCGATATTGAACCCTTTTTACAAAAAGTGACCATCAGAAAAGTCGTT
TCAAACAAAGATATCGAGGTCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042047-exon-sc0003168-1575043694:9143..9411 | TCONS_00042047-exon-sc0003168-1575043694:9143..9411 | Clytia hemisphaerica | exon |
| TCONS_00042047-exon-sc0003168-1575043694:6461..7647 | TCONS_00042047-exon-sc0003168-1575043694:6461..7647 | Clytia hemisphaerica | exon |
| TCONS_00042047-exon-sc0003168-1510915933:9143..9411 | TCONS_00042047-exon-sc0003168-1510915933:9143..9411 | Clytia hemisphaerica | exon |
| TCONS_00042047-exon-sc0003168-1510915933:6461..7647 | TCONS_00042047-exon-sc0003168-1510915933:6461..7647 | Clytia hemisphaerica | exon |
| TCONS_00042047-exon-sc0003168-1491911889:9143..9411 | TCONS_00042047-exon-sc0003168-1491911889:9143..9411 | Clytia hemisphaerica | exon |
| TCONS_00042047-exon-sc0003168-1491911889:6461..7647 | TCONS_00042047-exon-sc0003168-1491911889:6461..7647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003168 | supercontig | sc0003168:6461..9411 - |
Blast
The following BLAST results are available for this feature:
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